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Simpler test data path in tests/nextflow.config #4285

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Merged
mashehu merged 3 commits into from
Jul 17, 2026
Merged

Simpler test data path in tests/nextflow.config #4285

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11eca7d
Simpler test data path and improve comments in nextflow.config
maxulysse May 18, 2026
7af164d
only run codspeed on python file changes
mashehu Jul 17, 2026
ad63b99
update changelog
mashehu Jul 17, 2026
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8 changes: 6 additions & 2 deletions .github/workflows/codspeed.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -5,9 +5,13 @@ on:
branches:
- main
- dev
paths:
- codspeed.yml
- nf_core/**/*.py
pull_request:
# `workflow_dispatch` allows CodSpeed to trigger backtest
# performance analysis in order to generate initial data.
paths:
- codspeed.yml
- nf_core/**/*.py
workflow_dispatch:

# Cancel if a newer run with the same workflow name is queued
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -32,6 +32,7 @@

- New pre-commit hooks blocking large files and merge markers in pipeline template ([#3935](https://github.com/nf-core/tools/pull/3935))
- add `process_low_memory` resource label to `base.config` ([#4264](https://github.com/nf-core/tools/pull/4264))
- Simpler test data path in `tests/nextflow.config` ([#4285](https://github.com/nf-core/tools/pull/4285))
- fix dead link ([#4307](https://github.com/nf-core/tools/pull/4307))
- remove date placeholder from changelog title ([#4333](https://github.com/nf-core/tools/pull/4333))
- correct always-true `nf-core pipelines lint` condition in the linting workflow and fix doc typos (broken `#lint-tests` anchor, duplicate word, stray code-span space) ([#4324](https://github.com/nf-core/tools/pull/4324))
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5 changes: 3 additions & 2 deletions nf_core/pipeline-template/tests/nextflow.config
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Expand Up @@ -8,7 +8,8 @@
// Or any resources requirements
params {
modules_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/'
pipelines_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/{{ short_name }}/'
pipelines_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/{{ short_name }}/'
}

aws.client.anonymous = true // fixes S3 access issues on self-hosted runners
// Fixes S3 access issues on self-hosted runners
aws.client.anonymous = true