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Binary file modified docs/assets/coremeta4cat_vocabulary.xlsx
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870 changes: 832 additions & 38 deletions docs/schema/coremeta4cat.yaml

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625 changes: 599 additions & 26 deletions src/coremeta4cat/datamodel/coremeta4cat.py

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3,405 changes: 3,172 additions & 233 deletions src/coremeta4cat/datamodel/coremeta4cat_pydantic.py

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105 changes: 104 additions & 1 deletion src/coremeta4cat/schema/coremeta4cat_common.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -218,7 +218,7 @@ classes:
# ==================== QUANTITATIVE ATTRIBUTE SUB-SLOTS ====================
# Sub-slots of has_quantitative_attribute (from DCAT-AP-PLUS via material_entities_ap).
# Slots reused from the import chain (material_entities_ap, chemical_entities_ap):
# has_temperature, has_mass, has_volume, has_pressure, has_concentration, has_ph_value
# has_temperature, has_mass, has_volume, has_pressure, has_concentration, has_ph_value, has_yield
# The slots below cover quantities not yet defined upstream.

slots:
Expand Down Expand Up @@ -291,6 +291,28 @@ slots:
range: MassToChargeRatio
description: Mass-to-charge ratio in mass spectrometric measurements.

has_conversion:
is_a: has_quantitative_attribute
slot_uri: SIO:000008
range: Conversion
description: |-
A dimensionless physical quantity describing the fraction of a reactant that reacts in a chemical conversion. If a reactant is consumed completely its conversion is 1 (or 100 %).

has_space_time_yield:
is_a: has_quantitative_attribute
slot_uri: SIO:000008
range: SpaceTimeYield
description: |-
A physical quantity that describes the amount of product produced per unit of time and unit of producing entity. The producing entity is for example the volume of a chemical reactor or in catalysis the mass or volume or moles of catalyst. Example unit: kg{product} / (hour * cubicmeter{catalyst})

has_selectivity:
is_a: has_quantitative_attribute
slot_uri: SIO:000008
range: Selectivity
description: |-
A dimensionless physical quantity describing how effective a reactant is converted to the desired product in a chemical conversion. It is calculated as the ratio between the amount of the desired product and the amount of the desired product that could have been formed if all reactants were converted to the desired product. The selectivity is 1 (or 100 %) if no other than the desired product is formed.
multivalued: true

# ---- Contextualized sub-slots for drying step ----
# Used in DryingMixin where both temperature and duration appear together.

Expand Down Expand Up @@ -373,6 +395,87 @@ slots:
range: Duration
description: Integration or acquisition time per measurement step.

has_cathode:
is_a: carried_out_by
slot_uri: VOC4CAT:0007254
range: string
description: |-
The electrode where reduction occurs in an electrochemical cell. It is the negative electrode in an electrolytic cell, while it is the positive electrode in a galvanic cell.

has_anode:
is_a: carried_out_by
slot_uri: VOC4CAT:0007255
range: string
description: |-
The electrode where oxidation occurs in an electrochemical cell. It is the positive electrode in an electrolytic cell, while it is the negative electrode in a galvanic cell.

has_cell_operating_mode:
is_a: has_qualitative_attribute
slot_uri: SIO:000008
range: string
description: |-
The functional mode of an electrochemical cell based on the direction of energy conversion, specifiying wheter the system generates electrical energy from spontaneous reactions or consumes energy to drive non-spontaneous reactions.

has_active_area:
is_a: has_quantitative_attribute
slot_uri: SIO:000008
range: QuantitativeAttribute
description: |-
In contrast to substrate area, the actual area of a sample or electrode which is active.

has_faradaic_current:
is_a: has_quantitative_attribute
slot_uri: SIO:000008
range: QuantitativeAttribute
description: |-
The current that is flowing through an electrochemical cell and is causing (or is caused by) chemical reactions (charge transfer) occurring at the electrode surfaces.

has_stirrer_type:
is_a: has_qualitative_attribute
slot_uri: VOC4CAT:0008113
range: string
inlined: false
inlined_as_list: false
description: |-
The category of mechanical or magnetic agitation device used to ensure homogeneous mixing within a reaction system or mixing vessel, such as a magnetic stirrer or an overhead mechanical (steel shaft) stirrer.

has_stirrer_diameter:
is_a: has_quantitative_attribute
slot_uri: VOC4CAT:0008115
range: QuantitativeAttribute
description: |-
The effective diameter of the stirrer. Typically expressed as the distance across the rotating blade or mixing head from one tip to the opposite tip.

has_catalyst_particle_size:
is_a: has_quantitative_attribute
slot_uri: VOC4CAT:0008212
range: QuantitativeAttribute
description: |-
A measure of the characteristic linear dimension of a particle in a sample, typically reported as diameter, equivalent diameter, or another size metric determined by an appropriate measurement method.

has_catalyst_bed_volume:
is_a: has_quantitative_attribute
slot_uri: VOC4CAT:0007021
range: QuantitativeAttribute
description: |-
The bulk volume taken up by the catalyst and potential diluent in a fixed bed reactor.

has_catalyst_dilution_material:
is_a: has_qualitative_attribute
slot_uri: VOC4CAT:0008218
range: QualitativeAttribute
inlined: false
inlined_as_list: false
description: |-
An inert solid mixed with catalyst particles in a fixed bed to modify bed properties (e.g., improve heat transfer, hydrodynamics or isothermicity) without participating in the reaction.

has_catalyst_bed_height:
is_a: has_quantitative_attribute
slot_uri: VOC4CAT:0008217
range: QuantitativeAttribute
description: |-
The axial length of the packed catalyst section in a reactor, measured along the direction of flow between the defined bed boundaries.

# ---- Generic domain has_X slots (QualitativeAttribute) ----

has_atmosphere:
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