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Support identical fastq filenames for multiple flow cell directories.#1172

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DriesSchaumont wants to merge 2 commits into
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cellranger_multi_identical_file_names
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Support identical fastq filenames for multiple flow cell directories.#1172
DriesSchaumont wants to merge 2 commits into
mainfrom
cellranger_multi_identical_file_names

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... Describe your changes ...

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Closes #xxxx (Replace xxxx with the GitHub issue number)

Checklist before requesting a review

  • I have performed a self-review of my code

  • Conforms to the Contributor's guide

  • Check the correct box. Does this PR contain:

    • Breaking changes
    • New functionality
    • Major changes
    • Minor changes
    • Documentation
    • Bug fixes
  • Proposed changes are described in the CHANGELOG.md

  • CI tests succeed!

@DriesSchaumont DriesSchaumont marked this pull request as ready for review April 23, 2026 10:46
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