Repositories list

• NEDSS-SystemAdminGuide

  Public
  SCSS

  •

  Apache License 2.0

  •1•4•0•8•Updated Mar 31, 2026Mar 31, 2026

• prime-reportstream

  Public
  ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.

  fhirpublic-healthcivic-tech+ 1

  fhirpublic-healthcivic-techhl7

  CSS

  •

  Creative Commons Zero v1.0 Universal

  •44•82•1.2k•85•Updated Mar 31, 2026Mar 31, 2026

• prime-fhir-converter

  Public
  The CDC’s Pandemic-Ready Interoperability Modernization Effort (PRIME) Java based FHIR conversion library

  fhirhl7v2fhir-converter

  fhirhl7v2fhir-converter

  Kotlin

  •

  Apache License 2.0

  •5•14•2•1•Updated Mar 31, 2026Mar 31, 2026

• NEDSS-Modernization

  Public
  Java

  •7•25•0•14•Updated Mar 31, 2026Mar 31, 2026

• neissflow

  Public
  Nextflow pipeline for Neisseria gonorrhoeae isolate genome analysis

  Perl

  •

  Apache License 2.0

  •2•5•6•0•Updated Mar 31, 2026Mar 31, 2026

• nccdphp-ddt-kdss

  Public
  C#

  •0•0•0•1•Updated Mar 31, 2026Mar 31, 2026

• terraform-aws-dibbs-ecr-viewer

  Public
  HCL

  •

  Apache License 2.0

  •4•4•2•1•Updated Mar 31, 2026Mar 31, 2026

• phoenix

  Public
  🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens

  Python

  •

  Apache License 2.0

  •36•102•10•0•Updated Mar 31, 2026Mar 31, 2026

• cfa-stf-routine-forecasting

  Public
  Models and infrastructure for forecasting respiratory disease hospitalizations using wastewater data with PyRenew.

  Python

  •

  Apache License 2.0

  •3•16•57•4•Updated Mar 31, 2026Mar 31, 2026

• cdc-open-viz

  Public
  CDC OpenViz is a library of React packages for data visualization.

  reactvisualizationdata+ 1

  reactvisualizationdatavisualization-library

  TypeScript

  •

  Apache License 2.0

  •31•47•0•6•Updated Mar 31, 2026Mar 31, 2026

• ixa-epi-covid

  Public
  Rust

  •

  Apache License 2.0

  •1•1•22•10•Updated Mar 31, 2026Mar 31, 2026

• stimulant_opioid_algorithm_medical_codes_R

  Public
  HTML

  •

  Apache License 2.0

  •3•4•0•0•Updated Mar 30, 2026Mar 30, 2026

• Opioid_SUD_MHI_MedCodes

  Public
  Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data

  Python

  •8•7•0•0•Updated Mar 30, 2026Mar 30, 2026

• dibbs-aws

  Public template
  HCL

  •

  Creative Commons Zero v1.0 Universal

  •2•5•2•1•Updated Mar 30, 2026Mar 30, 2026

• ixa

  Public
  Rust

  •

  Apache License 2.0

  •8•21•64•4•Updated Mar 30, 2026Mar 30, 2026

• dibbs-star-wars-ecr-data

  Public
  XSLT

  •

  Apache License 2.0

  •0•2•0•2•Updated Mar 30, 2026Mar 30, 2026

• cfa-uw-modeling

  Public
  Modeling of M. genitalium and Chlamydia trachomatis, CFA-UW Collaboration

  R

  •

  Apache License 2.0

  •2•1•0•3•Updated Mar 30, 2026Mar 30, 2026

• dibbs-text-to-code

  Public
  Python

  •

  Apache License 2.0

  •0•1•36•3•Updated Mar 30, 2026Mar 30, 2026

• hl7v2-fhir-converter

  Public
  Converts HL7 v2 Messages to FHIR Resources

  Java

  •

  Apache License 2.0

  •48•1•0•2•Updated Mar 30, 2026Mar 30, 2026

• Form-5034

  Public
  3•0•0•0•Updated Mar 30, 2026Mar 30, 2026

• id-bioifx-workshop

  Public
  HTML

  •

  Apache License 2.0

  •1•1•0•8•Updated Mar 30, 2026Mar 30, 2026

• FHIRSheets

  Public
  Python

  •

  MIT License

  •4•3•0•0•Updated Mar 30, 2026Mar 30, 2026

• nccdphp-drh-mmria

  Public
  C#

  •

  GNU General Public License v3.0

  •0•2•0•2•Updated Mar 30, 2026Mar 30, 2026

• surveytable

  Public
  surveytable: Formatted Survey Estimates

  rpretty-printsurvey+ 3

  rpretty-printsurveytablesestimatesformatted-output

  R

  •

  Apache License 2.0

  •6•6•0•0•Updated Mar 30, 2026Mar 30, 2026

• zoe

  Public
  Zoe provides both broad and highly specialized implementations for bioinformatics. In particular, we focus on common data formats and methods relevant for the s…

  bioinformaticsncird-idcdc-influenza-division

  bioinformaticsncird-idcdc-influenza-division

  Rust

  •

  Apache License 2.0

  •3•7•0•0•Updated Mar 30, 2026Mar 30, 2026

• sirfunctions

  Public
  Key functions used by the SIR team

  R

  •

  Other

  •0•3•8•3•Updated Mar 30, 2026Mar 30, 2026

• dibbs-ecr-diff

  Public
  Python

  •

  Apache License 2.0

  •0•1•5•2•Updated Mar 30, 2026Mar 30, 2026

• pyrenew-flu-light

  Public
  A replication in Python and PyRenew of a renewal model written in Epidemia for forecasting influenza hospital admissions.

  statisticsmodelinginference+ 2

  statisticsmodelinginferenceforecasting-modelinfectious-disease-modeling

  Python

  •

  Apache License 2.0

  •2•1•9•1•Updated Mar 30, 2026Mar 30, 2026

• forecasttools-py

  Public
  A Python package for common pre- and post-processing operations done by CFA Predict for short term forecasting, nowcasting, and scenario modeling.

  infrastructureautomationabstraction+ 2

  infrastructureautomationabstractionforecastinginfectious-disease-modeling

  Python

  •

  Apache License 2.0

  •3•11•17•12•Updated Mar 30, 2026Mar 30, 2026

• hubverse-annotator

  Public
  Locally-hosted web application for visualization of hubverse formatted observations and model forecasts and for annotation of data and models.

  applicationdata-sciencehubverse+ 1

  applicationdata-sciencehubverseinfectious-disease-modeling

  Python

  •

  Apache License 2.0

  •0•3•18•8•Updated Mar 30, 2026Mar 30, 2026