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    517 repositories

    • stimulant_opioid_algorithm_medical_codes_R

      Public
      HTML
      •
      Apache License 2.0
      •3•4•0•0•Updated Jan 17, 2026Jan 17, 2026

    • eMKF

      Public
      SAS
      •
      Apache License 2.0
      •4•4•0•0•Updated Jan 17, 2026Jan 17, 2026

    • Opioid_SUD_MHI_MedCodes

      Public
      Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data
      Python
      •8•7•0•0•Updated Jan 17, 2026Jan 17, 2026

    • NEDSS-Modernization

      Public
      Java
      •6•24•0•14•Updated Jan 17, 2026Jan 17, 2026

    • prime-fhir-converter

      Public
      The CDC’s Pandemic-Ready Interoperability Modernization Effort (PRIME) Java based FHIR conversion library
      fhirhl7v2fhir-converter
      Kotlin
      •
      Apache License 2.0
      •5•14•2•1•Updated Jan 17, 2026Jan 17, 2026

    • cdc-open-viz

      Public
      CDC OpenViz is a library of React packages for data visualization.
      reactvisualizationdatavisualization-library
      TypeScript
      •
      Apache License 2.0
      •30•46•0•5•Updated Jan 17, 2026Jan 17, 2026

    • hubhelpr

      Public
      R package providing helper functions for CDC forecast hub maintenance and report generation.
      rinfluenzacdccovid-19rsvhubverse
      R
      •
      Apache License 2.0
      •0•3•17•1•Updated Jan 17, 2026Jan 17, 2026

    • wastewater-informed-covid-forecasting

      Public
      Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub
      R
      •
      Apache License 2.0
      •14•49•66•1•Updated Jan 17, 2026Jan 17, 2026

    • dibbs-ecr-refiner

      Public
      The DIBBs eCR Refiner reduces eICR and RR files down to only the most useful, necessary information to alleviate performance and storage burden on eCR data pipelines and disease surveillance systems and bring focus to pertinent data for a given reportable condition.
      XSLT
      •
      Apache License 2.0
      •3•5•52•8•Updated Jan 17, 2026Jan 17, 2026

    • cfa-cloudops

      Public
      Python
      •
      Apache License 2.0
      •1•2•8•1•Updated Jan 17, 2026Jan 17, 2026

    • cfa-dagster

      Public
      Python
      •
      Apache License 2.0
      •0•7•0•1•Updated Jan 16, 2026Jan 16, 2026

    • prime-simplereport

      Public
      SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.
      graphqlspring-bootreactjsterraform
      Java
      •
      Creative Commons Zero v1.0 Universal
      •63•61•181•28•Updated Jan 16, 2026Jan 16, 2026

    • dibbs-ecr-viewer

      Public
      DIBBS eCR Viewer
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •3•12•117•8•Updated Jan 16, 2026Jan 16, 2026

    • MicrobeTrace

      Public
      The Visualization Multitool for Molecular Epidemiology and Bioinformatics
      bioinformaticsgenomicsphylogenetic-treesphylogeneticsepidemiologynetwork-visualizationhivcdcphylogenomicsphylogeny
      TypeScript
      •45•95•74•7•Updated Jan 16, 2026Jan 16, 2026

    • sirfunctions

      Public
      Key functions used by the SIR team
      R
      •
      Other
      •0•3•7•1•Updated Jan 16, 2026Jan 16, 2026

    • zoe

      Public
      Zoe provides both broad and highly specialized implementations for bioinformatics. In particular, we focus on common data formats and methods relevant for the sequencing of RNA viruses.
      bioinformaticsncird-idcdc-influenza-division
      Rust
      •
      Apache License 2.0
      •3•7•0•0•Updated Jan 16, 2026Jan 16, 2026

    • nccdphp-drh-mmria

      Public
      C#
      •
      GNU General Public License v3.0
      •0•2•0•3•Updated Jan 16, 2026Jan 16, 2026

    • MIRA-NF

      Public
      quality-controlnextflowgenome-annotationirmainfluenzagenome-assemblynf-corenextflow-pipelinesars-cov-2rsv
      Nextflow
      •
      MIT License
      •6•12•1•0•Updated Jan 16, 2026Jan 16, 2026

    • dibbs-text-to-code

      Public
      Python
      •
      Apache License 2.0
      •0•1•49•3•Updated Jan 16, 2026Jan 16, 2026

    • MycoID

      Public
      Nextflow
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 16, 2026Jan 16, 2026

    • cfa-forecast-hub-reports

      Public
      Apache License 2.0
      •2•1•7•1•Updated Jan 16, 2026Jan 16, 2026

    • dibbs-vm

      Public
      Shell
      •
      Creative Commons Zero v1.0 Universal
      •4•1•26•4•Updated Jan 16, 2026Jan 16, 2026

    • cfa-immunization-uptake-projection

      Public
      Python
      •
      Apache License 2.0
      •3•3•10•4•Updated Jan 16, 2026Jan 16, 2026

    • PyRenew

      Public
      Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.
      packageepidemiologyrenewal-processinfectious-disease-models
      Python
      •
      Apache License 2.0
      •9•23•52•7•Updated Jan 16, 2026Jan 16, 2026

    • nbbp

      Public
      Negative binomial branching process final size distributions & parameter inference
      R
      •
      Apache License 2.0
      •2•1•10•1•Updated Jan 16, 2026Jan 16, 2026

    • tidypolis

      Public
      A package to simplify downloading, caching and updating POLIS data
      R
      •
      Other
      •2•3•10•1•Updated Jan 16, 2026Jan 16, 2026

    • prime-reportstream

      Public
      ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.
      fhirpublic-healthcivic-techhl7
      CSS
      •
      Creative Commons Zero v1.0 Universal
      •44•82•1.2k•94•Updated Jan 16, 2026Jan 16, 2026

    • nowcastNHSN

      Public
      Nowcasting for the NHSN hospitalisation signals
      R
      •
      Apache License 2.0
      •0•5•5•1•Updated Jan 16, 2026Jan 16, 2026

    • NEDSS-DataCompare

      Public
      TSQL
      •
      Apache License 2.0
      •2•2•0•5•Updated Jan 16, 2026Jan 16, 2026

    • pyrenew-hew

      Public
      Models and infrastructure for forecasting respiratory disease hospitalizations using wastewater data with PyRenew.
      Python
      •
      Apache License 2.0
      •3•16•57•3•Updated Jan 16, 2026Jan 16, 2026