Repositories list

• stimulant_opioid_algorithm_medical_codes_R

  Public
  HTML

  •

  Apache License 2.0

  •3•4•0•0•Updated Apr 5, 2026Apr 5, 2026

• Opioid_SUD_MHI_MedCodes

  Public
  Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data

  Python

  •8•7•0•0•Updated Apr 5, 2026Apr 5, 2026

• hubverse-annotator

  Public
  Locally-hosted web application for visualization of hubverse formatted observations and model forecasts and for annotation of data and models.

  applicationdata-sciencehubverse+ 1

  applicationdata-sciencehubverseinfectious-disease-modeling

  Python

  •

  Apache License 2.0

  •0•3•18•8•Updated Apr 5, 2026Apr 5, 2026

• prime-simplereport

  Public
  SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.

  graphqlspring-bootreactjs+ 1

  graphqlspring-bootreactjsterraform

  Java

  •

  Creative Commons Zero v1.0 Universal

  •64•62•183•40•Updated Apr 5, 2026Apr 5, 2026

• cfa-simulator

  Public
  TypeScript

  •

  Apache License 2.0

  •0•0•2•0•Updated Apr 5, 2026Apr 5, 2026

• phoenix

  Public
  🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens

  Python

  •

  Apache License 2.0

  •36•102•10•0•Updated Apr 5, 2026Apr 5, 2026

• nhsnlink

  Public
  C#

  •1•1•0•17•Updated Apr 4, 2026Apr 4, 2026

• ixa

  Public
  Rust

  •

  Apache License 2.0

  •8•21•62•6•Updated Apr 4, 2026Apr 4, 2026

• ixa-epi-covid

  Public
  Rust

  •

  Apache License 2.0

  •1•1•20•4•Updated Apr 4, 2026Apr 4, 2026

• dibbs-ecr-refiner

  Public
  The DIBBs eCR Refiner reduces eICR and RR files down to only the most useful, necessary information to alleviate performance and storage burden on eCR data pipe…

  XSLT

  •

  Apache License 2.0

  •4•6•58•4•Updated Apr 4, 2026Apr 4, 2026

• prime-fhir-converter

  Public
  The CDC’s Pandemic-Ready Interoperability Modernization Effort (PRIME) Java based FHIR conversion library

  fhirhl7v2fhir-converter

  fhirhl7v2fhir-converter

  Kotlin

  •

  Apache License 2.0

  •5•14•2•0•Updated Apr 4, 2026Apr 4, 2026

• cdc-open-viz

  Public
  CDC OpenViz is a library of React packages for data visualization.

  reactvisualizationdata+ 1

  reactvisualizationdatavisualization-library

  TypeScript

  •

  Apache License 2.0

  •31•47•0•6•Updated Apr 4, 2026Apr 4, 2026

• PyRenew

  Public
  Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.

  packageepidemiologyrenewal-process+ 1

  packageepidemiologyrenewal-processinfectious-disease-models

  Python

  •

  Apache License 2.0

  •9•27•66•5•Updated Apr 4, 2026Apr 4, 2026

• NEDSS-Modernization

  Public
  Java

  •7•25•0•12•Updated Apr 4, 2026Apr 4, 2026

• cfa-calibration-tools

  Public
  Python

  •

  Apache License 2.0

  •0•0•11•1•Updated Apr 3, 2026Apr 3, 2026

• NEDSS-DataIngestion

  Public
  Data Ingestion for Modernization of NEDSS Project by Enquizit

  Java

  •

  Apache License 2.0

  •7•9•0•7•Updated Apr 3, 2026Apr 3, 2026

• dibbs-text-to-code

  Public
  Python

  •

  Apache License 2.0

  •0•1•34•4•Updated Apr 3, 2026Apr 3, 2026

• NEDSS-DataReporting

  Public
  Data Near Real Time Reporting micro services for Modernized NBS System

  TSQL

  •

  Apache License 2.0

  •7•3•0•4•Updated Apr 3, 2026Apr 3, 2026

• NEDSS-Helm

  Public
  This repository is created for NEDSS Helm charts.

  Go Template

  •

  Apache License 2.0

  •7•4•0•28•Updated Apr 3, 2026Apr 3, 2026

• id-bioifx-workshop

  Public
  HTML

  •

  Apache License 2.0

  •1•1•0•10•Updated Apr 3, 2026Apr 3, 2026

• covid19-forecast-hub

  Public
  A repository run by the Centers for Disease Control and Prevention (CDC) to collect forecasts of incident respiratory COVID-19 hospital admissions and emergency…

  forecastingcovid-19hubverse+ 2

  forecastingcovid-19hubversecenters-for-disease-control-and-preventioncenter-for-forecasting-and-outbreak-analytics

  Apache License 2.0

  •30•24•9•2•Updated Apr 3, 2026Apr 3, 2026

• cfa-forecast-hub-reports

  Public
  Apache License 2.0

  •2•1•1•1•Updated Apr 3, 2026Apr 3, 2026

• cfa-stf-routine-forecasting

  Public
  Models and infrastructure for forecasting respiratory disease hospitalizations using wastewater data with PyRenew.

  Python

  •

  Apache License 2.0

  •3•16•59•5•Updated Apr 3, 2026Apr 3, 2026

• nccdphp-drh-mmria

  Public
  C#

  •

  GNU General Public License v3.0

  •0•2•0•2•Updated Apr 3, 2026Apr 3, 2026

• cfa-epinow2-pipeline

  Public
  R

  •

  Apache License 2.0

  •6•13•43•8•Updated Apr 3, 2026Apr 3, 2026

• dibbs-ecr-viewer

  Public
  DIBBS eCR Viewer

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •4•13•151•17•Updated Apr 3, 2026Apr 3, 2026

• dibbs-FHIR-Converter

  Public
  Conversion utility to translate legacy data formats into FHIR

  C#

  •206•6•23•4•Updated Apr 3, 2026Apr 3, 2026

• MIRA-NF

  Public
  quality-controlnextflowgenome-annotation+ 9

  quality-controlnextflowgenome-annotationirmainfluenzagenome-assemblynf-corenextflow-pipelinesars-cov-2rsv+ 2

  Nextflow

  •

  MIT License

  •7•17•1•0•Updated Apr 3, 2026Apr 3, 2026

• NEDSS-Workflows

  Public
  2•1•0•0•Updated Apr 3, 2026Apr 3, 2026

• lib-hl7v2-nist-validator

  Public
  The lib-hl7v2-nist-validator is a wrapper around the NIST HL7v2 Validator.

  Kotlin

  •

  Other

  •3•2•0•0•Updated Apr 3, 2026Apr 3, 2026