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    • mett-dataportal

      Public
      Python
      0000Updated Feb 2, 2026Feb 2, 2026
    • emgapi-v2

      Public
      MGnify API (v2) and production automation system
      HTML
      12010Updated Feb 2, 2026Feb 2, 2026
    • Nextflow
      2701Updated Feb 2, 2026Feb 2, 2026
    • nf-modules

      Public
      Microbiome Informatics NF modules and subworkflows
      JavaScript
      1501Updated Feb 2, 2026Feb 2, 2026
    • mgnipy

      Public
      a python sdk for the MGnify API
      Python
      00110Updated Feb 1, 2026Feb 1, 2026
    • This Python package contains a collection of scripts and tools for including in MGnify pipelines
      Python
      2101Updated Jan 28, 2026Jan 28, 2026
    • nextflow-in-an-hour

      Public
      Nextflow
      0300Updated Jan 28, 2026Jan 28, 2026
    • Prefect worker to run flows on a Slurm HPC cluster
      Python
      11501Updated Jan 27, 2026Jan 27, 2026
    • Repository to contain containers used by EBI Microbiome Informatics
      Python
      0000Updated Jan 27, 2026Jan 27, 2026
    • mgnify-jbrowse

      Public
      TypeScript
      0000Updated Jan 27, 2026Jan 27, 2026
    • miassembler

      Public
      Nextflow
      0400Updated Jan 26, 2026Jan 26, 2026
    • assembly-analysis-pipeline

      Public
      MGnify Assembly Analysis Pipeline
      JavaScript
      0000Updated Jan 23, 2026Jan 23, 2026
    • datascout

      Public
      This repo queries and gather data from different resources which can then be used to run bulk automatised annotation of microbial genomes.The different types of…
      Standard ML
      0040Updated Jan 23, 2026Jan 23, 2026
    • ME TT Data Portal Client
      Python
      0000Updated Jan 22, 2026Jan 22, 2026
    • This repos contains the MGnify web client
      TypeScript
      14018Updated Jan 22, 2026Jan 22, 2026
    • Viral catalogue generation pipeline
      Python
      0002Updated Jan 20, 2026Jan 20, 2026
    • This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)
      Python
      63000Updated Jan 19, 2026Jan 19, 2026
    • Python
      0002Updated Jan 19, 2026Jan 19, 2026
    • Python
      58220Updated Jan 16, 2026Jan 16, 2026
    • raw-reads-analysis-pipeline

      Public
      Raw Reads Analysis Pipeline
      Nextflow
      0000Updated Jan 15, 2026Jan 15, 2026
    • Nextflow pipeline that wraps the assembly-MAG linking script
      0000Updated Jan 15, 2026Jan 15, 2026
    • Python script to upload bins and MAGs to ENA (European Nucleotide Archive)
      Python
      52501Updated Jan 14, 2026Jan 14, 2026
    • MGnify genome analysis pipeline
      Python
      2210893Updated Jan 9, 2026Jan 9, 2026
    • MGnifyR

      Public
      R package for searching, downloading and analysis of EBI MGnify metagenomics data
      R
      102370Updated Jan 9, 2026Jan 9, 2026
    • Branchwater result processing for Phase 2 of MGnify genome–assembly linkage.
      Python
      0000Updated Jan 1, 2026Jan 1, 2026
    • Nextflow
      0341Updated Dec 22, 2025Dec 22, 2025
    • hmmer

      Public
      HMMER: biological sequence analysis using profile HMMs
      C
      89000Updated Dec 22, 2025Dec 22, 2025
    • SCSS
      4000Updated Dec 19, 2025Dec 19, 2025
    • VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
      Python
      21146130Updated Dec 17, 2025Dec 17, 2025
    • A web component that let you select FastA or FastQ sequence files and creates sketches (KmerMinHash signatures) using Sourmash.
      TypeScript
      3211Updated Dec 14, 2025Dec 14, 2025