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    221 repositories

    • ensembl-datacheck-py

      Public
      Python
      •
      Apache License 2.0
      •4•2•0•4•Updated Mar 6, 2026Mar 6, 2026

    • ensembl-client

      Public
      Ensembl beta client
      TypeScript
      •
      Apache License 2.0
      •4•15•0•3•Updated Mar 6, 2026Mar 6, 2026

    • ensembl-analysis

      Public
      Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
      Perl
      •
      Apache License 2.0
      •35•18•0•0•Updated Mar 6, 2026Mar 6, 2026

    • ensembl-genes

      Public
      Python Ensembl Gene Annotation code source repository
      Python
      •
      Apache License 2.0
      •4•4•0•3•Updated Mar 6, 2026Mar 6, 2026

    • ensembl-dauphin-style-compiler

      Public
      "dauphin" style-compiler for genome browser
      Rust
      •0•0•10•1•Updated Mar 6, 2026Mar 6, 2026

    • ensembl

      Public
      The Ensembl Core Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •78•83•2•1•Updated Mar 5, 2026Mar 5, 2026

    • hprc-qc

      Public
      Perl
      •
      Apache License 2.0
      •1•2•3•1•Updated Mar 5, 2026Mar 5, 2026

    • ensembl-web-track-api

      Public
      A Django app for serving the available annotation tracks for Ensembl client.
      Python
      •
      Apache License 2.0
      •1•1•0•0•Updated Mar 5, 2026Mar 5, 2026

    • ensembl-variation-pipelines

      Public
      Python
      •
      Apache License 2.0
      •4•0•0•5•Updated Mar 5, 2026Mar 5, 2026

    • ensembl-webcode

      Public
      The code to run an Ensembl website
      Perl
      •
      Apache License 2.0
      •52•22•0•5•Updated Mar 5, 2026Mar 5, 2026

    • ensembl-datacheck

      Public
      Code for checking Ensembl databases during release production
      Perl
      •
      Apache License 2.0
      •28•5•0•2•Updated Mar 5, 2026Mar 5, 2026

    • ensembl-compara

      Public
      The Ensembl Compara Perl API and SQL schema
      mysqlapibioinformatics
      mysqlapibioinformaticsdatabaseperlensemblcomparative-genomics
      Perl
      •
      Apache License 2.0
      •69•55•0•4•Updated Mar 4, 2026Mar 4, 2026

    • public-plugins

      Public
      Plugins for an Ensembl website
      JavaScript
      •
      Apache License 2.0
      •48•9•0•1•Updated Mar 4, 2026Mar 4, 2026

    • ensembl-vep

      Public
      The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
      Perl
      •
      Apache License 2.0
      •177•537•68•3•Updated Mar 4, 2026Mar 4, 2026

    • ensembl-metadata-api

      Public
      ensembl_genome_metadata schema SQLAlchemy ORM layer
      Python
      •
      Apache License 2.0
      •2•2•0•3•Updated Mar 4, 2026Mar 4, 2026

    • ensembl-anno

      Public
      Python
      •
      Apache License 2.0
      •7•11•1•3•Updated Mar 4, 2026Mar 4, 2026

    • ensembl-rest

      Public
      Language agnostic RESTful data access to Ensembl data over HTTP
      Perl
      •
      Apache License 2.0
      •61•150•6•0•Updated Mar 4, 2026Mar 4, 2026

    • ensembl-web-metadata-api

      Public
      Metadata API for beta.ensembl.org
      Python
      •
      Apache License 2.0
      •0•0•0•2•Updated Mar 4, 2026Mar 4, 2026

    • ensembl-genes-metadata

      Public
      0•1•2•1•Updated Mar 4, 2026Mar 4, 2026

    • ensembl-production

      Public
      Ensembl Production code
      Perl
      •
      Apache License 2.0
      •44•12•0•5•Updated Mar 3, 2026Mar 3, 2026

    • ensembl-genes-nf

      Public
      Ensembl Genebuild NextFlow pipelines
      Nextflow
      •
      Apache License 2.0
      •5•2•0•2•Updated Mar 3, 2026Mar 3, 2026

    • ensembl-genomio

      Public
      Pipelines to turn basic genomic data into Ensembl cores and back
      Python
      •
      Apache License 2.0
      •10•9•0•5•Updated Mar 3, 2026Mar 3, 2026

    • ensembl-elements

      Public
      Ensembl shared elements
      TypeScript
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 3, 2026Mar 3, 2026

    • ensembl-production-metazoa

      Public
      Metazoan production helper library and script to import ad-hoc annotations.
      Shell
      •
      Apache License 2.0
      •3•1•0•1•Updated Feb 27, 2026Feb 27, 2026

    • VEP_plugins

      Public
      Plugins for the Ensembl Variant Effect Predictor (VEP)
      Perl
      •
      Apache License 2.0
      •124•165•5•2•Updated Feb 26, 2026Feb 26, 2026

    • nextflow_modules

      Public
      A collection of shared Ensembl modules used in NextFlow pipelines
      Nextflow
      •3•3•1•2•Updated Feb 25, 2026Feb 25, 2026

    • ensembl-thoas

      Public
      Son of Ariadne, a GraphQL server and supporting software
      Python
      •
      Apache License 2.0
      •0•3•0•7•Updated Feb 24, 2026Feb 24, 2026

    • ensembl-variation

      Public
      The Ensembl Variation Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •58•30•0•17•Updated Feb 18, 2026Feb 18, 2026

    • ensemblgenomes.org

      Public
      Source code for ensemblgenomes.org
      TypeScript
      •
      Apache License 2.0
      •1•0•0•0•Updated Feb 16, 2026Feb 16, 2026

    • thr

      Public
      Second implementation of Trackhub Registry
      Python
      •
      Apache License 2.0
      •2•1•0•2•Updated Feb 12, 2026Feb 12, 2026