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    218 repositories

    • thr

      Public
      Second implementation of Trackhub Registry
      Python
      •
      Apache License 2.0
      •2•1•0•9•Updated Jun 12, 2026Jun 12, 2026

    • thr_frontend

      Public
      JavaScript
      •
      Apache License 2.0
      •0•1•0•15•Updated Jun 12, 2026Jun 12, 2026

    • ensembl-genomio

      Public
      Pipelines to turn basic genomic data into Ensembl cores and back
      Python
      •
      Apache License 2.0
      •11•10•0•1•Updated Jun 12, 2026Jun 12, 2026

    • ensembl-genes

      Public
      Python Ensembl Gene Annotation code source repository
      Python
      •
      Apache License 2.0
      •4•4•0•5•Updated Jun 12, 2026Jun 12, 2026

    • ensembl-web-tools-api

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Jun 12, 2026Jun 12, 2026

    • tark

      Public
      HTML
      •
      Apache License 2.0
      •3•4•4•3•Updated Jun 12, 2026Jun 12, 2026

    • distiller

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•3•Updated Jun 12, 2026Jun 12, 2026

    • ensembl-variation-pipelines

      Public
      Python
      •
      Apache License 2.0
      •4•0•0•9•Updated Jun 12, 2026Jun 12, 2026

    • nextflow_modules

      Public
      A collection of shared Ensembl modules used in NextFlow pipelines
      Nextflow
      •3•4•1•3•Updated Jun 11, 2026Jun 11, 2026

    • ensembl-anno

      Public
      Python
      •
      Apache License 2.0
      •7•11•1•2•Updated Jun 11, 2026Jun 11, 2026

    • ensembl-metadata-api

      Public
      ensembl_genome_metadata schema SQLAlchemy ORM layer
      Python
      •
      Apache License 2.0
      •2•2•0•6•Updated Jun 11, 2026Jun 11, 2026

    • ensembl-analysis

      Public
      Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
      Perl
      •
      Apache License 2.0
      •36•18•0•2•Updated Jun 11, 2026Jun 11, 2026

    • ensembl-client

      Public
      Ensembl beta client
      TypeScript
      •
      Apache License 2.0
      •4•16•0•2•Updated Jun 11, 2026Jun 11, 2026

    • ensembl-compara

      Public
      The Ensembl Compara Perl API and SQL schema
      mysqlapibioinformatics
      mysqlapibioinformaticsdatabaseperlensemblcomparative-genomics
      Perl
      •
      Apache License 2.0
      •68•56•0•2•Updated Jun 10, 2026Jun 10, 2026

    • ensembl-website-help-and-docs

      Public
      documentation for the new Ensembl site
      TypeScript
      •6•1•0•5•Updated Jun 10, 2026Jun 10, 2026

    • ensembl-thoas

      Public
      Son of Ariadne, a GraphQL server and supporting software
      Python
      •
      Apache License 2.0
      •2•3•0•11•Updated Jun 10, 2026Jun 10, 2026

    • ensembl-vep

      Public
      The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
      Perl
      •
      Apache License 2.0
      •179•559•74•3•Updated Jun 10, 2026Jun 10, 2026

    • airflow-providers-ensemblslurm

      Public
      Airflow operators to submit and monitor the slurm jobs
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Jun 9, 2026Jun 9, 2026

    • ensembl-elements

      Public
      Ensembl shared elements
      TypeScript
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 9, 2026Jun 9, 2026

    • ensembl-rest

      Public
      Language agnostic RESTful data access to Ensembl data over HTTP
      Perl
      •
      Apache License 2.0
      •62•151•7•0•Updated Jun 8, 2026Jun 8, 2026

    • public-plugins

      Public
      Plugins for an Ensembl website
      JavaScript
      •
      Apache License 2.0
      •50•9•0•2•Updated Jun 8, 2026Jun 8, 2026

    • ensembl

      Public
      The Ensembl Core Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •77•83•2•1•Updated Jun 8, 2026Jun 8, 2026

    • ensembl-webcode

      Public
      The code to run an Ensembl website
      Perl
      •
      Apache License 2.0
      •53•22•0•0•Updated Jun 8, 2026Jun 8, 2026

    • ensembl-glossary

      Public
      Makefile
      •
      Apache License 2.0
      •4•2•0•2•Updated Jun 5, 2026Jun 5, 2026

    • ensembl-datacheck-py

      Public
      Python
      •
      Apache License 2.0
      •5•2•0•2•Updated Jun 5, 2026Jun 5, 2026

    • VEP_plugins

      Public
      Plugins for the Ensembl Variant Effect Predictor (VEP)
      Perl
      •
      Apache License 2.0
      •122•170•6•3•Updated Jun 4, 2026Jun 4, 2026

    • ensembl-utils

      Public
      Ensembl python utils
      Python
      •
      Apache License 2.0
      •3•6•0•0•Updated Jun 4, 2026Jun 4, 2026

    • ensembl-variation

      Public
      The Ensembl Variation Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •58•30•0•7•Updated Jun 3, 2026Jun 3, 2026

    • ensembl-hypsipyle

      Public
      Ensembl Variation GraphQL server
      Python
      •
      Apache License 2.0
      •3•0•5•2•Updated Jun 3, 2026Jun 3, 2026

    • ensembl-genes-nf

      Public
      Ensembl Genebuild NextFlow pipelines
      Nextflow
      •
      Apache License 2.0
      •6•2•0•2•Updated Jun 2, 2026Jun 2, 2026
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