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@GMOD Generic Model Organism Database Project

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    111 repositories

    • jbrowse-components

      Public
      Source code for JBrowse 2, a modern React-based genome browser
      visualizationbioinformaticsgenomicsjbrowse
      TypeScript
      •
      Apache License 2.0
      •74•270•209•19•Updated Jan 11, 2026Jan 11, 2026

    • gmod.github.io

      Public
      GMOD Website, derived from gmod.github.io
      HTML
      •0•1•0•0•Updated Jan 10, 2026Jan 10, 2026

    • jb2hubs

      Public
      JBrowse 2 genome hubs... for all the things!
      TypeScript
      •0•0•32•1•Updated Jan 9, 2026Jan 9, 2026

    • jbrowse-plugin-msaview

      Public
      multiple sequence alignment browser plugin for JBrowse 2
      TypeScript
      •
      Apache License 2.0
      •0•5•5•0•Updated Jan 9, 2026Jan 9, 2026

    • JBrowseMSA

      Public
      A multiple sequence alignment viewer
      TypeScript
      •
      MIT License
      •3•24•25•0•Updated Jan 9, 2026Jan 9, 2026

    • jbrowse-plugin-protein3d

      Public
      3D protein structure visualizer in jbrowse 2 - WIP
      TypeScript
      •0•0•4•0•Updated Jan 9, 2026Jan 9, 2026

    • indexedfasta-js

      Public
      Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi
      TypeScript
      •
      MIT License
      •3•12•0•0•Updated Jan 8, 2026Jan 8, 2026

    • msa-viewer-bench

      Public
      TypeScript
      •0•0•0•0•Updated Jan 8, 2026Jan 8, 2026

    • bbi-js

      Public
      Parser for bigwig and bigbed files
      TypeScript
      •
      MIT License
      •6•8•8•1•Updated Jan 6, 2026Jan 6, 2026

    • librpc-web-mod

      Public
      Promise-based RPC client and server for web workers
      TypeScript
      •
      MIT License
      •3•0•0•0•Updated Jan 4, 2026Jan 4, 2026

    • cram-js

      Public
      Read CRAM v3 and v2 in node or in the browser
      genomics
      C
      •
      MIT License
      •8•18•7•1•Updated Dec 31, 2025Dec 31, 2025

    • g2p_mapper

      Public
      TypeScript
      •1•0•0•1•Updated Dec 31, 2025Dec 31, 2025

    • generic-filehandle2

      Public
      modernization of the original generic-filehandle, no Buffer polyfill needed
      TypeScript
      •0•0•0•1•Updated Dec 29, 2025Dec 29, 2025

    • tabix-js

      Public
      Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser
      TypeScript
      •
      MIT License
      •4•14•2•0•Updated Dec 24, 2025Dec 24, 2025

    • jexl

      Public
      fork of TomFrost/jexl for jbrowse use
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Dec 23, 2025Dec 23, 2025

    • jbrowse-react-linear-genome-view-nextjs-demo

      Public
      TypeScript
      •1•1•1•0•Updated Dec 21, 2025Dec 21, 2025

    • jbrowse-react-app-nextjs-demo

      Public
      TypeScript
      •0•1•1•0•Updated Dec 21, 2025Dec 21, 2025

    • jbrowse-react-circular-genome-view-nextjs-demo

      Public
      TypeScript
      •0•0•0•0•Updated Dec 21, 2025Dec 21, 2025

    • jbrowse-react-linear-genome-view-vite-demo

      Public
      TypeScript
      •1•0•0•0•Updated Dec 21, 2025Dec 21, 2025

    • jbrowse-react-app-vite-demo

      Public
      TypeScript
      •0•1•1•0•Updated Dec 21, 2025Dec 21, 2025

    • bam-js

      Public
      Parse BAM and BAM index files in javascript for node and the browser
      TypeScript
      •
      MIT License
      •9•24•6•1•Updated Dec 19, 2025Dec 19, 2025

    • abortable-promise-cache

      Public
      add AbortController support to a cache of async requests
      TypeScript
      •
      MIT License
      •2•6•1•5•Updated Dec 17, 2025Dec 17, 2025

    • bgzf-filehandle

      Public
      Nodejs filehandle for reading bgzip+.gzi compressed files
      TypeScript
      •
      MIT License
      •4•7•4•1•Updated Dec 17, 2025Dec 17, 2025

    • nclist-js

      Public
      Read JBrowse v1 nested containment list feature stores from modern JS
      TypeScript
      •
      MIT License
      •0•0•0•1•Updated Dec 17, 2025Dec 17, 2025

    • Apollo3

      Public
      JBrowse 2 plugin for editing annotations on an Apollo server
      TypeScript
      •
      Apache License 2.0
      •7•15•69•3•Updated Dec 16, 2025Dec 16, 2025

    • ixixx-js

      Public
      TypeScript
      •
      MIT License
      •2•3•1•0•Updated Dec 14, 2025Dec 14, 2025

    • trix-js

      Public
      Read UCSC Trix indexes in pure JavaScript
      TypeScript
      •
      Apache License 2.0
      •2•0•1•2•Updated Dec 14, 2025Dec 14, 2025

    • generic-filehandle

      Public
      use a subset of the NodeJS promise-based file handle API to access both local and remote files
      TypeScript
      •6•4•4•3•Updated Dec 11, 2025Dec 11, 2025

    • twobit-js

      Public
      Read .2bit files with pure JS. Works in node or webpack.
      TypeScript
      •
      MIT License
      •1•4•0•0•Updated Dec 11, 2025Dec 11, 2025

    • jbrowse-plugin-list

      Public
      List of plugins for the JBrowse 2 plugin store.
      JavaScript
      •5•2•0•2•Updated Dec 4, 2025Dec 4, 2025