Repositories list

• biomero-converter

  Public
  Convert db image format to Ome-Tiff and Ome-Zarr

  Python

  •

  Apache License 2.0

  •00 forks•11 star•00 issues•00 pull requests•Updated May 21, 2026May 21, 2026

• OMERO.biomero

  Public
  Plugin adding monitored, in-place uploads and workflows to OMERO Webclient

  JavaScript

  •

  GNU Affero General Public License v3.0

  •11 fork•22 stars•11 issue•44 pull requests•Updated May 21, 2026May 21, 2026

• biomero-scripts

  Public
  Scripts for use with BIOMERO

  slurmhigh-performance-computingfair+ 8

  slurmhigh-performance-computingfairimage-analysisomerobioimaginghigh-throughput-screeninghigh-content-screeningcytominebiomero+ 1

  Python

  •

  GNU General Public License v2.0

  •22 forks•55 stars•11 issue•22 pull requests•Updated May 21, 2026May 21, 2026

• biomero

  Public
  BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster

  pythonslurmhigh-performance-computing+ 9

  pythonslurmhigh-performance-computingfairimage-analysisomerobioimaginghigh-throughput-screeninghigh-content-screeningcytomine+ 2

  Python

  •

  Apache License 2.0

  •66 forks•2828 stars•33 issues•33 pull requests•Updated May 21, 2026May 21, 2026

• NL-BIOMERO

  Public
  NL‑BIOMERO delivers a full containerized stack to run OMERO together with the BIOMERO 2.0 framework. It provides Docker/Podman configurations and Compose files …

  containersomerobiomero

  containersomerobiomero

  Shell

  •

  Other

  •1313 forks•1212 stars•00 issues•33 pull requests•Updated May 20, 2026May 20, 2026

• ConvertLeica-Docker

  Public
  Python

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 19, 2026May 19, 2026

• fair-segmentation

  Public
  FAIR organelle segmentation pipeline

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 15, 2026May 15, 2026

• OMERO.forms

  Public
  Extension to OMERO.web to enhance metadata input and provide provenance

  webappomero

  webappomero

  Python

  •

  GNU Affero General Public License v3.0

  •88 forks•99 stars•00 issues•00 pull requests•Updated May 7, 2026May 7, 2026

• BIOMERO.importer

  Public
  System that allows automatic importing of datasets via local network

  omero-import

  omero-import

  Python

  •

  Apache License 2.0

  •00 forks•33 stars•00 issues•00 pull requests•Updated May 7, 2026May 7, 2026

• omero-deployment-kit

  Public
  deployment solution for OMERO designed for research institutions that require production-ready OMERO server with minimal hassle

  Jinja

  •11 fork•77 stars•00 issues•00 pull requests•Updated May 6, 2026May 6, 2026

• ISA-REMBI-Metadata-Modules

  Public
  Repository to organize REMBI and ISA metadata modules

  11 fork•22 stars•22 issues•11 pull request•Updated May 1, 2026May 1, 2026

• NL-BIOMERO-Local-Slurm

  Public
  A Slurm cluster using docker-compose

  hpccontainersslurm+ 1

  hpccontainersslurmbiomero

  Dockerfile

  •

  MIT License

  •259259 forks•66 stars•11 issue•00 pull requests•Updated Apr 14, 2026Apr 14, 2026

• biomero-workflows

  Public
  Gather workflows that can be used in BIOMERO

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 8, 2025Dec 8, 2025

• discussions

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Feb 13, 2025Feb 13, 2025