Repositories list

• Arborist_Data

  Public
  The data accompaniment to the Arborist manuscript.

  00 forks•11 star•00 issues•00 pull requests•Updated May 11, 2026May 11, 2026

• ASCAT.sc

  Public
  HTML

  •

  GNU General Public License v3.0

  •1515 forks•2828 stars•11 issue•00 pull requests•Updated May 1, 2026May 1, 2026

• mpnst_phase_1

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 19, 2026Apr 19, 2026

• DNAStream

  Public
  DNAStream is an HDF5-based data structure for efficient storage, indexing, logging and retrieval of processed DNA sequencing data across multiple sequencing mod…

  Python

  •00 forks•11 star•00 issues•00 pull requests•Updated Mar 12, 2026Mar 12, 2026

• SomaticKoN_NF

  Public
  A flexible somatic mutation calling pipeline using K-of-N consensus from multiple variant callers.

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 3, 2026Mar 3, 2026

• ascat

  Public
  ASCAT R package

  HTML

  •9494 forks•200200 stars•66 issues•11 pull request•Updated Feb 12, 2026Feb 12, 2026

• gritic

  Public
  A tool for timing complex copy number gains in cancer.

  Python

  •

  GNU Affero General Public License v3.0

  •33 forks•2020 stars•66 issues•00 pull requests•Updated Dec 4, 2025Dec 4, 2025

• Arborist

  Public
  A tool to rank SNV phylogenies inferred from bulk DNA sequencing via low-pass scDNA-seq data.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•44 stars•00 issues•00 pull requests•Updated Dec 4, 2025Dec 4, 2025

• CAMDAC

  Public
  HTML

  •

  GNU General Public License v3.0

  •66 forks•1212 stars•33 issues•22 pull requests•Updated Sep 22, 2025Sep 22, 2025

• gritic_analysis

  Public
  Analysis scripts accompanying the manuscript for 'The history of chromosomal instability in genome doubled tumors'.

  Python

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 21, 2024Jun 21, 2024