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    19 repositories

    • MetaGeneMark-2

      Public
      MetaGeneMark-2: Improved Gene Prediction in Metagenomes
      AMPL
      •
      Other
      •5•23•0•0•Updated Mar 20, 2026Mar 20, 2026

    • HPVarcall

      Public
      Variant calling for lineage and sublineage classification of Human Papillomavirus (HPV)
      Perl
      •
      Other
      •0•0•0•0•Updated Feb 25, 2026Feb 25, 2026

    • HPVarcall-exp

      Public
      Experiments for HPVarcall project
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 5, 2026Jan 5, 2026

    • GeneMark-ETP

      Public
      GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology
      AMPL
      •8•29•11•0•Updated Apr 11, 2025Apr 11, 2025

    • GeneMarkHmmEukaryotic3

      Public
      GeneMark.hmm eukaryotic algorithm-3 version 3.68.pub
      C++
      •1•0•0•0•Updated Nov 10, 2023Nov 10, 2023

    • ProtHint

      Public
      Protein hint generation pipeline for gene finding in eukaryotic genomes
      Python
      •
      Other
      •13•61•15•0•Updated Oct 27, 2023Oct 27, 2023

    • Mgcod

      Public
      Tool for recognizing genetic codes (incl. multiple genetic codes in phage genomes) and genetic-code-informed annotation of coding regions in prokaryotic sequenc…
      Python
      •
      GNU General Public License v3.0
      •0•10•0•0•Updated Sep 9, 2023Sep 9, 2023

    • BRAKER3-exp

      Public
      0•0•0•0•Updated Jun 13, 2023Jun 13, 2023

    • GeneMark-ETP-exp

      Public
      Experiments for the GeneMark-ETP project
      Perl
      •0•2•2•0•Updated Jun 9, 2023Jun 9, 2023

    • BRAKER2-exp

      Public
      Experiments for the BRAKER2 project
      Perl
      •2•4•0•0•Updated Jun 3, 2023Jun 3, 2023

    • GeneMark-EP-plus

      Public
      GeneMark-EP and -EP+: automatic eukaryotic gene prediction supported by spliced aligned proteins
      1•11•7•0•Updated Nov 28, 2022Nov 28, 2022

    • StartLink-exp

      Public
      Python
      •0•0•1•0•Updated Jun 15, 2021Jun 15, 2021

    • MetaGeneMark-2-exp

      Public
      AMPL
      •
      MIT License
      •1•2•1•0•Updated Apr 6, 2021Apr 6, 2021

    • EukSpecies-BRAKER2

      Public
      Repository with data of eukaryotic species used in BRAKER2 experiments
      Perl
      •2•5•0•0•Updated Feb 25, 2021Feb 25, 2021

    • spaln-boundary-scorer

      Public
      Spaln boundary scorer parses introns, starts, stops and exons from Spaln's alignment output and scores them based on local alignment quality
      C++
      •1•1•2•0•Updated Feb 23, 2021Feb 23, 2021

    • GeneMark-E-Docs

      Public
      Documentation site for GeneMark-ES suite
      0•1•1•0•Updated Oct 27, 2020Oct 27, 2020

    • EukSpecies-EP

      Public
      Perl
      •0•0•0•0•Updated Apr 27, 2020Apr 27, 2020

    • GeneMark-EP-ProtHint-exp

      Public
      Experiments for GeneMark-EP/EP+ and ProtHint projects
      Shell
      •0•3•1•0•Updated Mar 18, 2020Mar 18, 2020

    • prosplign-intron-scorer

      Public
      ProSplign intron scorer parses introns from ProSplign's alignment output and scores them based on local alignment quality.
      C++
      •1•0•0•0•Updated Nov 14, 2019Nov 14, 2019
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