Skip to content

@krumsieklab Krumsiek Lab

All

    Repositories list

    31 repositories

    • aibridge

      Public
      Python
      •
      MIT License
      •1•0•6•0•Updated Jun 26, 2026Jun 26, 2026

    • ph-rv-metabolomics

      Public
      Jupyter Notebook
      •0•0•0•0•Updated May 29, 2026May 29, 2026

    • rox

      Public
      Rox package
      R
      •0•0•0•0•Updated Apr 8, 2026Apr 8, 2026

    • maplet

      Public
      R statistical toolbox for metabolomics
      R
      •
      GNU General Public License v3.0
      •6•27•72•0•Updated Apr 1, 2026Apr 1, 2026

    • hypocaloric-diet-bc

      Public
      R
      •0•0•0•0•Updated Mar 15, 2026Mar 15, 2026

    • keto-beam-ad

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Apr 13, 2025Apr 13, 2025

    • microbe-metabolite-interaction

      Public
      Codebase- CB
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

    • autofocus

      Public
      Code repository for the AutoFocus project
      R
      •0•3•0•0•Updated Sep 6, 2024Sep 6, 2024

    • RAGatouille

      Public
      Easily use and train state of the art late-interaction retrieval methods (ColBERT) in any RAG pipeline. Designed for modularity and ease-of-use, backed by resea…
      Python
      •
      Apache License 2.0
      •276•0•0•0•Updated Aug 19, 2024Aug 19, 2024

    • prostate-cancer-edrn

      Public
      R
      •
      MIT License
      •1•1•0•0•Updated Nov 27, 2023Nov 27, 2023

    • PRIME

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Nov 16, 2023Nov 16, 2023

    • sgi

      Public
      SGI: automatic clinical subgroup identification in omics datasets
      R
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Oct 21, 2023Oct 21, 2023

    • ad-mayo-tauopathies

      Public
      R
      •0•0•0•0•Updated Jul 17, 2023Jul 17, 2023

    • covid-ards-urine

      Public
      R
      •0•1•0•0•Updated Mar 30, 2023Mar 30, 2023

    • covid-ards-plasma

      Public
      R
      •0•1•0•0•Updated Mar 30, 2023Mar 30, 2023

    • pitracer

      Public
      HTML
      •0•1•0•0•Updated Feb 26, 2023Feb 26, 2023

    • ad-brain-landscape

      Public
      The landscape of metabolic brain alterations in Alzheimer’s disease (supplementary code)
      R
      •0•2•0•0•Updated Nov 5, 2022Nov 5, 2022

    • ad-adni-Xplatforms

      Public
      R
      •0•0•0•0•Updated Sep 4, 2022Sep 4, 2022

    • rpair

      Public
      regularized-pairwise-ranking-models
      Fortran
      •0•0•0•0•Updated Aug 23, 2022Aug 23, 2022

    • maplet-shiny

      Public
      R
      •0•0•0•0•Updated Jul 16, 2022Jul 16, 2022

    • mtVAE

      Public
      Variational autoencoders learn universal latent representations of metabolomics data (supplementary code)
      R
      •
      GNU General Public License v3.0
      •2•14•1•1•Updated Jun 12, 2022Jun 12, 2022

    • covid-vascular-injury

      Public
      The maladaptive vascular response in COVID-19 acute respiratory distress syndrome and recovery (supplementary code)
      R
      •0•0•0•0•Updated Mar 10, 2022Mar 10, 2022

    • covid-omics

      Public
      Integrative Metabolomic and Proteomic Signatures Define Clinical Outcomes in Severe COVID-19 (supplementary code)
      R
      •0•0•1•0•Updated Feb 6, 2022Feb 6, 2022

    • glioma-cysteine

      Public
      Cysteine induces mitochondrial reductive stress in glioblastoma through hydrogen peroxide production (supplementary code)
      R
      •0•0•0•0•Updated Sep 1, 2021Sep 1, 2021

    • BDS-Capstone

      Public
      R
      •3•0•0•0•Updated Jun 23, 2021Jun 23, 2021

    • MoDentify

      Public
      Phenotype-driven module identification based on multi-level networks, R package
      R
      •3•7•5•0•Updated Mar 19, 2021Mar 19, 2021

    • CutoffOpt

      Public
      Prior-knowledge-based cutoff optimization for correlation networks (supplementary code for doi:10.1038/s41467-020-18675-3)
      R
      •4•5•0•0•Updated Oct 15, 2020Oct 15, 2020

    • GlycoNorm

      Public
      Network-based evaluation of data normalization strategies (supplementary code for doi:10.3390/metabo10070271)
      R
      •0•0•0•0•Updated Jul 2, 2020Jul 2, 2020

    • Odefy

      Public
      Odefy MATLAB package
      MATLAB
      •0•2•2•0•Updated Oct 28, 2019Oct 28, 2019

    • SurvRank

      Public
      SurvRank R package
      R
      •0•1•1•0•Updated Apr 12, 2019Apr 12, 2019
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.