Repositories list

• spindalis

  Public
  A bioinformatics-focused library for numerical modeling, optimisation, and simulation written in Rust

  rustparserbioinformatics+ 10

  rustparserbioinformaticsparsingintegrationregressionrust-langpolynomialderivativeintegral+ 3

  Rust

  •

  MIT License

  •1111 forks•1616 stars•1010 issues•00 pull requests•Updated Jun 16, 2026Jun 16, 2026

• goombay-rs

  Public
  Rust implementation of my goombay python project. Implements several sequence alignment algorithms such as Waterman-Smith-Beyer, Gotoh, and Needleman-Wunsch int…

  Rust

  •

  MIT License

  •44 forks•77 stars•77 issues•00 pull requests•Updated Jun 14, 2026Jun 14, 2026

• goombay

  Public
  Python implementation of several sequence alignment algorithms such as Waterman-Smith-Beyer, Gotoh, and Needleman-Wunsch intended to calculate distance, show al…

  pythondistancesmith-waterman+ 17

  pythondistancesmith-watermanneedleman-wunschpython3similarityjaro-winklerlevenshtein-distancealignmentlongest-common-subsequence+ 10

  Python

  •

  MIT License

  •33 forks•2121 stars•77 issues•11 pull request•Updated Jun 2, 2026Jun 2, 2026

• pyrolysate

  Public
  API and CLI that convert URLs and emails to CSV, JSON, or text with outputs to console or to a file

  pythonurljson+ 4

  pythonurljsoncsvemailpython3url-parser

  Python

  •

  Creative Commons Zero v1.0 Universal

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 1, 2026May 1, 2026

• biobase

  Public
  A home for all biological/bioinformatics constants from protein strings to BLOSUM matrices.

  pythonbioinformaticsparsing+ 17

  pythonbioinformaticsparsingpambiologymotifpython3dnaproteinfasta+ 10

  Python

  •

  MIT License

  •55 forks•1212 stars•33 issues•00 pull requests•Updated May 1, 2026May 1, 2026

• jedvek

  Public
  Multidimensional Rust vectors with a 1D footprint

  rustvectormatrix+ 1

  rustvectormatrixrust-lang

  Rust

  •

  MIT License

  •11 fork•22 stars•22 issues•00 pull requests•Updated Apr 2, 2026Apr 2, 2026