Repositories list

• GlobeQuant_DDA

  Public
  0•0•0•0•Updated Dec 18, 2025Dec 18, 2025

• GlobeQuant_DIA

  Public
  0•0•0•0•Updated Dec 18, 2025Dec 18, 2025

• ipf_howtoguides

  Public
  Repo for webpage with How-To guides for image processing, created by the SCF from the MPI-CBG Dresden.

  Ruby

  •

  BSD 3-Clause "New" or "Revised" License

  •3•3•0•2•Updated Aug 26, 2025Aug 26, 2025

• halcyon

  Public
  Halcyon is JavaFX framework for designing dockable multiple window applications

  Java

  •

  GNU General Public License v2.0

  •1•5•5•1•Updated Jul 12, 2025Jul 12, 2025

• gtt

  Public
  Gitlab Time Tracker App

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •1•4•0•0•Updated May 27, 2025May 27, 2025

• scion

  Public
  1•0•0•0•Updated Apr 9, 2025Apr 9, 2025

• BioImageAnalysisToolbox

  Public
  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •1•2•0•1•Updated Mar 3, 2025Mar 3, 2025

• Interactive-H-Watershed

  Public
  preview watershed results on the fly as you update segmentation parameters

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •2•8•8•0•Updated Feb 7, 2025Feb 7, 2025

• gearshifft_results

  Public
  Collection of Results produced by Gearshifft

  R

  •2•1•1•2•Updated Nov 29, 2024Nov 29, 2024

• GQ

  Public
  Another Global Quant

  0•0•0•0•Updated May 8, 2024May 8, 2024

• gearshifft

  Public
  Benchmark Suite for Heterogenuous FFT Implementations

  C++

  •

  Apache License 2.0

  •10•35•15•7•Updated Jan 6, 2024Jan 6, 2024

• ij2course-regions

  Public
  Java

  •0•0•0•0•Updated Dec 14, 2021Dec 14, 2021

• ij2course-images

  Public
  Java

  •3•4•1•0•Updated Dec 14, 2021Dec 14, 2021

• ij2course-tables

  Public
  Java

  •0•0•0•0•Updated Dec 14, 2021Dec 14, 2021

• BioImageEssentialsToolbox

  Public
  Generic image processing plugins for Fiji. To be distributed via SCF update site

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jun 24, 2021Jun 24, 2021

• segmentation_3d_tools

  Public
  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•2•2•0•Updated Nov 5, 2019Nov 5, 2019

• mpicbg-scicomp.github.io

  Public
  MPI-CBG Scientific Computing Facility

  0•1•0•0•Updated Jan 14, 2019Jan 14, 2019

• tissue_miner

  Public
  A toolkit to quantify cell dynamics in living tissues

  R

  •

  BSD 3-Clause "New" or "Revised" License

  •9•12•9•1•Updated Dec 18, 2018Dec 18, 2018

• snakemake-workflows

  Public
  snakemake workflows produced, tested and used at MPI CBG

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •9•7•5•0•Updated Nov 22, 2018Nov 22, 2018

• phylo-io

  Public
  Phylo.IO JS tree viewer

  JavaScript

  •

  MIT License

  •11•0•0•0•Updated Jul 10, 2018Jul 10, 2018

• CourseIntroToIA

  Public
  3•8•0•0•Updated Dec 1, 2017Dec 1, 2017

• dlbc17-python-intro

  Public archive
  Python

  •

  Other

  •19•2•0•0•Updated Aug 21, 2017Aug 21, 2017

• Manual_drift_correction

  Public
  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•1•0•Updated Jul 13, 2017Jul 13, 2017

• ij2course-scijava-plugin-mechanism

  Public
  Java

  •0•0•0•0•Updated Jun 23, 2017Jun 23, 2017

• gearshifft_publication

  Public
  Publication Manuscript for results obtained with gearshifft

  TeX

  •

  Other

  •1•0•2•0•Updated Jun 20, 2017Jun 20, 2017

• imagej-legacy

  Public
  Backwards compatibility with ImageJ 1.x

  Java

  •

  Other

  •27•0•0•0•Updated May 17, 2017May 17, 2017

• imagej-table-charts

  Public
  Java

  •1•0•0•0•Updated Jan 30, 2017Jan 30, 2017

• scijava-common

  Public
  A plugin framework and application container with built-in extensibility mechanism.

  Java

  •

  Other

  •54•0•0•0•Updated Dec 30, 2016Dec 30, 2016

• imagej-tutorials

  Public
  ImageJ2 programming examples

  Java

  •116•0•0•0•Updated Dec 10, 2016Dec 10, 2016

• ThreeDViewer

  Public
  ThreeDViewer is an ImageJ/FIJI plugin for visualization and interaction with 3D data

  Java

  •

  BSD 2-Clause "Simplified" License

  •20•0•0•0•Updated Dec 9, 2016Dec 9, 2016