All

110 repositories

nextflow-dev-builds
Public
Automated development builds of Nextflow from master and open pull requests, for testing purposes only
Apache License 2.0
•0•0•0•1•Updated Jul 11, 2026Jul 11, 2026
nextflow
Public
A DSL for data-driven computational pipelines
docker groovy hello
docker groovy hello aws cloud bioinformatics pipeline nextflow hpc reproducible-research
Groovy
•
Apache License 2.0
•790•3.4k•337•120•Updated Jul 10, 2026Jul 10, 2026
nf-co2footprint
Public
A Nextflow plugin to estimate the CO₂ footprint of pipeline runs.
workflow bioinformatics analysis
workflow bioinformatics analysis nextflow pipelines emissions co2 co2-footprint
Groovy
•
Apache License 2.0
•12•27•9•3•Updated Jul 10, 2026Jul 10, 2026
plugins
Public
Nextflow plugins index repository
35•6•0•48•Updated Jul 8, 2026Jul 8, 2026
tree-sitter-nextflow
Public
JavaScript
•2•3•8•0•Updated Jul 7, 2026Jul 7, 2026
nf-schema
Public
Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
workflow bioinformatics schema
workflow bioinformatics schema validation pipeline nextflow json-schema params parameter-validation nextflow-schema
Groovy
•
Apache License 2.0
•31•55•39•3•Updated Jul 7, 2026Jul 7, 2026
training
Public
Nextflow training material
training learning tutorial
training learning tutorial workshop nextflow pipelines teaching workflows
Nextflow
•
Other
•322•254•37•19•Updated Jul 6, 2026Jul 6, 2026
nf-ga4gh
Public
GA4GH plugin for Nextflow
Java
•
Apache License 2.0
•6•5•9•2•Updated Jul 4, 2026Jul 4, 2026
run-until
Public
Iterative run-until-condition loops in Nextflow using topic channels
Nextflow
•
MIT License
•0•0•0•0•Updated Jul 3, 2026Jul 3, 2026
summit-website
Public
TypeScript
•5•2•0•1•Updated Jul 1, 2026Jul 1, 2026
language-server
Public
The Nextflow language server
nextflow language-server-protocol
nextflow language-server-protocol
Java
•
Apache License 2.0
•7•31•29•11•Updated Jun 30, 2026Jun 30, 2026
nf-nomad
Public
Hashicorp Nomad executor plugin for Nextflow
Groovy
•
Apache License 2.0
•6•4•0•0•Updated Jun 30, 2026Jun 30, 2026
website
Public
Nextflow public web site
HTML
•141•9•2•17•Updated Jun 24, 2026Jun 24, 2026
vscode-language-nextflow
Public
Nextflow language support for Visual Studio Editor
nextflow vscode-extension
nextflow vscode-extension
TypeScript
•
MIT License
•18•38•14•9•Updated Jun 24, 2026Jun 24, 2026
agent-skills
Public
Claude Code Plugin for Nextflow
Apache License 2.0
•0•11•0•4•Updated Jun 19, 2026Jun 19, 2026
rnaseq-nf
Public
A proof of concept of RNAseq pipeline
genomics nextflow rnaseq
genomics nextflow rnaseq
Nextflow
•
Apache License 2.0
•119•85•4•0•Updated Jun 19, 2026Jun 19, 2026
nf-plugin-template
Public template
Template project for creating Nextflow plugins (beta)
Groovy
•
Apache License 2.0
•3•1•1•0•Updated Jun 15, 2026Jun 15, 2026
nextflow-plugin-gradle
Public
Gradle plugin for making Nextflow plugins
Groovy
•
Apache License 2.0
•0•3•1•2•Updated Jun 15, 2026Jun 15, 2026
blast-example
Public
A basic blast pipeline using nextflow
Nextflow
•17•10•0•0•Updated Jun 8, 2026Jun 8, 2026
schemas
Public
Specifications of Nextflow schemas
nextflow json-schema nf-core
nextflow json-schema nf-core
Shell
•
Apache License 2.0
•2•4•6•2•Updated May 29, 2026May 29, 2026
hyperopt
Public
Nextflow pipeline for hyperparameter optimization of machine learning models
machine-learning nextflow
machine-learning nextflow
Python
•
Mozilla Public License 2.0
•6•25•0•0•Updated May 26, 2026May 26, 2026
citations
Public
Generate up to date plots of Nextflow citations, vs. other workflow managers.
Python
•
Apache License 2.0
•0•0•2•0•Updated May 22, 2026May 22, 2026
nf-prov
Public
Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-Crate.
bioinformatics nextflow pipelines
bioinformatics nextflow pipelines crates provenance workflows research-object biocompute-objects bco biocompute
Groovy
•
Apache License 2.0
•13•30•14•1•Updated May 17, 2026May 17, 2026
hello
Public
Classic hello world script in Nextflow language
nextflow hello-world
nextflow hello-world
Nextflow
•
Apache License 2.0
•124•26•0•6•Updated May 13, 2026May 13, 2026
nf-stress
Public
Docker container used to run Nextflow stress metrics
Nextflow
•
Apache License 2.0
•1•0•0•0•Updated Apr 18, 2026Apr 18, 2026
k8s-fuse-plugin
Public
Kubernetes device plugin for using /dev/fuse without privileged flag
Go
•
Apache License 2.0
•4•25•4•0•Updated Apr 10, 2026Apr 10, 2026
.github
Public
Apache License 2.0
•0•1•0•0•Updated Mar 20, 2026Mar 20, 2026
nf-parquet
Public
Plugin implementing the support for Apache Parquet files (experimental)
nextflow parquet
nextflow parquet
Groovy
•
Apache License 2.0
•2•4•1•0•Updated Mar 14, 2026Mar 14, 2026
trademark
Public
Nextflow logo & trademark policy
nextflow
nextflow
3•4•0•0•Updated Mar 4, 2026Mar 4, 2026
test-hello
Public
"hello" project used by Nextflow CI tests
Nextflow
•
Apache License 2.0
•0•0•0•0•Updated Dec 1, 2025Dec 1, 2025

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nextflow-io

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All

110 repositories

nextflow-dev-builds

nextflow

nf-co2footprint

plugins

tree-sitter-nextflow

nf-schema

training

nf-ga4gh

run-until

summit-website

language-server

nf-nomad

website

vscode-language-nextflow

agent-skills

rnaseq-nf

nf-plugin-template

nextflow-plugin-gradle

blast-example

schemas

hyperopt

citations

nf-prov

hello

nf-stress

k8s-fuse-plugin

.github

nf-parquet

trademark

test-hello

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Repositories list

110 repositories