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    18 repositories

    • organoid-cell-spots

      Public
      Repo for spot segmentation in organoids
      Python
      •0•0•0•0•Updated Apr 22, 2026Apr 22, 2026

    • cellpose_practical

      Public
      Example notebook for EBI cellpose practical
      Jupyter Notebook
      •0•0•0•0•Updated Mar 16, 2026Mar 16, 2026

    • testa-organoid-nuclei

      Public
      Nuclear Segmentation on organoid slices
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Feb 18, 2026Feb 18, 2026

    • harschnitz-organoid-nuclei

      Public
      Nuclear segmentation and quantification of organoid slices
      internalorganoidsnuclear-segmentation
      internalorganoidsnuclear-segmentationharschnitz
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 20, 2026Jan 20, 2026

    • kymograph-synthesis

      Public
      A repository for generating synthetic kymographs
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Dec 5, 2025Dec 5, 2025

    • cell_boundaries

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 27, 2025Nov 27, 2025

    • protrusion-splitting

      Public
      Repository for Kalebic protrusion splitting project
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 23, 2025Apr 23, 2025

    • facility-sop

      Public
      SOPs for human technopole image analysis unit
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Feb 10, 2025Feb 10, 2025

    • cellmap_pipelines

      Public
      Utilities to run CellMap training and fine-tuning
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • erdmann-cell-counting

      Public
      Counting of DAPI-stained cells embedded in gel
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Sep 5, 2024Sep 5, 2024

    • chabot_2024

      Public
      Radial shape analysis for Chabot 2024
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 15, 2024Jul 15, 2024

    • headless_fiji

      Public
      A proof of concept pipeline to download, update and run Fiji in headless mode.
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Jun 28, 2024Jun 28, 2024

    • advanced-scripting

      Public
      ImageJ Macro
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Jun 11, 2024Jun 11, 2024

    • competitive_binding

      Public
      A notebook to fit a protein competitive binding model to a protein fluorescence anisotropy assay.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jun 26, 2023Jun 26, 2023

    • pasteur_n2v

      Public
      Instructions for DL restoration workshop.
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jun 5, 2023Jun 5, 2023

    • pasteur_n2v_scripts

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jun 5, 2023Jun 5, 2023

    • .github

      Public
      Welcome page of the NoBIAS facility
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated May 26, 2023May 26, 2023

    • nobias-fht.github.io

      Public
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated May 24, 2023May 24, 2023
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