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    14 repositories

    • openpipeline

      Public
      Python
      •
      MIT License
      •15•35•32•15•Updated Aug 7, 2026Aug 7, 2026

    • openpipeline_spatial

      Public
      Python
      •
      MIT License
      •3•1•4•2•Updated Aug 4, 2026Aug 4, 2026

    • openpipeline_docs

      Public
      Draft next-generation documentation site for the OpenPipeline ecosystem (single-cell + spatial). Quarto.
      SCSS
      •0•0•1•1•Updated Jul 30, 2026Jul 30, 2026

    • openpipeline_rapids

      Public
      Best-practice workflows for single-cell multi-omics analyses using rapids-singlecell.
      nextflowgpusingle-cell
      nextflowgpusingle-cellmultimodalrapidsviash
      Python
      •
      MIT License
      •0•0•9•0•Updated Jul 30, 2026Jul 30, 2026

    • openpipeline_incubator

      Public
      An extension of OpenPipeline for temporary and experimental modules and workflows
      Python
      •
      MIT License
      •0•0•1•4•Updated Jul 23, 2026Jul 23, 2026

    • openpipeline_qc

      Public
      Python
      •
      MIT License
      •1•0•8•0•Updated Jul 21, 2026Jul 21, 2026

    • openpipeline_composed

      Public
      Nextflow
      •
      MIT License
      •0•0•2•1•Updated Jul 21, 2026Jul 21, 2026

    • core

      Public
      Python
      •
      MIT License
      •0•0•0•2•Updated Jul 21, 2026Jul 21, 2026

    • website

      Public
      R
      •
      MIT License
      •2•2•6•15•Updated Jul 11, 2026Jul 11, 2026

    • siqc

      Public
      TypeScript
      •0•0•4•3•Updated Feb 19, 2026Feb 19, 2026

    • test-nxf-caching

      Public
      Nextflow
      •0•0•0•0•Updated May 21, 2025May 21, 2025

    • base-images

      Public archive
      MIT License
      •0•0•0•2•Updated Sep 4, 2023Sep 4, 2023

    • logos

      Public
      1•0•0•0•Updated Mar 30, 2023Mar 30, 2023

    • openpipelines-bio.github.io

      Public
      HTML
      •0•0•0•0•Updated Nov 3, 2022Nov 3, 2022
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