rnabioco repositories

105 repositories

leech
Public
Learning Enhanced Electrical Classifiers from Hanopore signals
machine-learning rna-seq nanopore
machine-learning rna-seq nanopore torch
Python
•
MIT License
•0•0•24•2•Updated Sep 17, 2026Sep 17, 2026
escapepod-rs
Public
Rust library and CLI for pod5 manipulation, classification, and demux
python rust nanopore
python rust nanopore demux pod5
Rust
•
MIT License
•0•4•8•3•Updated Sep 17, 2026Sep 17, 2026
raer
Public
Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments
rna-seq-analysis single-cell-rna-seq bioconductor-package
rna-seq-analysis single-cell-rna-seq bioconductor-package single-cell-analysis
C
•
Other
•2•11•2•1•Updated Sep 16, 2026Sep 16, 2026
molb-7950
Public
MOLB 7950: Informatics and Statistics for Molecular Biology
HTML
•0•5•0•0•Updated Sep 15, 2026Sep 15, 2026
aa-tRNA-seq-pipeline
Public
Snakemake pipeline to process nanopore aa-tRNA-seq data
rna-seq snakemake nanopore-sequencing
rna-seq snakemake nanopore-sequencing
Python
•
MIT License
•0•0•9•5•Updated Sep 14, 2026Sep 14, 2026
clover
Public
R package for analysis of nanopore tRNA sequencing data
rna-seq bioconductor trna-annotation
rna-seq bioconductor trna-annotation
R
•
Other
•0•2•8•5•Updated Sep 14, 2026Sep 14, 2026
sracha-rs
Public
Rust-based sra-tools
sra fastq-dump fastq-files
sra fastq-dump fastq-files ncbi-sra
Rust
•
MIT License
•5•73•0•0•Updated Sep 14, 2026Sep 14, 2026
fcount-rs
Public
Rust-based exon counting optimized for RNA-seq
rna-seq featurecounts
rna-seq featurecounts
Rust
•
MIT License
•0•3•2•5•Updated Sep 14, 2026Sep 14, 2026
fqxv
Public
Rust-based FASTQ archiving
rust fastq fastq-compression
rust fastq fastq-compression
Rust
•
Apache License 2.0
•0•2•6•2•Updated Sep 13, 2026Sep 13, 2026
hesselberthlab.org
Public
Lab website
TeX
•
MIT License
•0•0•3•0•Updated Sep 10, 2026Sep 10, 2026
trna-lifecycle-figure
Public
Python
•0•0•0•0•Updated Sep 8, 2026Sep 8, 2026
bodhi-docs
Public
Bodhi slurm migration guide
Shell
•0•0•9•1•Updated Sep 8, 2026Sep 8, 2026
sinteractive
Public
Persistent interactive sessions on Slurm compute nodes
tmux slurm
tmux slurm
Rust
•
MIT License
•0•1•0•0•Updated Sep 7, 2026Sep 7, 2026
nanopore-dna-modification-pipeline
Public
Snakemake pipeline for ONT modified DNA analysis
Python
•
MIT License
•0•0•1•0•Updated Sep 4, 2026Sep 4, 2026
scraps
Public
Single Cell RNA PolyA Site Discovery
Python
•
MIT License
•4•11•7•0•Updated Jul 27, 2026Jul 27, 2026
valr
Public
Genome Interval Arithmetic in R
genome interval-arithmetic bedtools
genome interval-arithmetic bedtools
R
•
Other
•26•97•0•0•Updated Jul 9, 2026Jul 9, 2026
aform-rs
Public
TUI for Stockholm MSA viz/edit
rna-structure msa stockholm
rna-structure msa stockholm tui-rs
Rust
•0•2•2•0•Updated Jul 8, 2026Jul 8, 2026
squiggy-positron
Public
Positron extension to visualize POD5 nanopore signals
visualization api nanopore
visualization api nanopore positron squiggle
Python
•
MIT License
•0•2•17•5•Updated Jul 6, 2026Jul 6, 2026
remote-ssh-positron
Public
Positron on CU compute clusters
Shell
•0•5•1•0•Updated Jul 3, 2026Jul 3, 2026
cpp11bigwig
Public
Read bigWig and bigBed files in R
C
•
Other
•1•4•0•0•Updated Jun 26, 2026Jun 26, 2026
2a-peptide-search
Public
HMM models of the 2A peptide and DB search results
Python
•0•0•3•1•Updated May 8, 2026May 8, 2026
fuzzyfastq-rs
Public
Rust implementation of fuzzy matching of sequences in FASTQ files
Rust
•1•1•0•0•Updated Apr 10, 2026Apr 10, 2026
2026-johnson-m6a
Public
Python
•0•0•0•0•Updated Apr 6, 2026Apr 6, 2026
morrison-chronic-chikv-xenium
Public
Quantification of CHIKV RNA at 28 dpi using spatial transcriptomics
R
•0•1•0•0•Updated Mar 13, 2026Mar 13, 2026
morrison-chronic-chikv
Public
Quantification of CHIKV RNA at 28 dpi using scRNA-seq
HTML
•0•1•0•0•Updated Mar 13, 2026Mar 13, 2026
bonito
Public
A PyTorch Basecaller for Oxford Nanopore Reads
Python
•
Other
•143•0•0•0•Updated Feb 20, 2026Feb 20, 2026
ucsc_snapshots
Public
Robotically fetch images for specified regions from the UCSC Genome Browser
Python
•0•5•0•0•Updated Jan 18, 2026Jan 18, 2026
charmer-rs
Public
TUI to monitor snakemake pipelines
snakemake snakemake-pipeline
snakemake snakemake-pipeline
Rust
•
MIT License
•0•0•0•2•Updated Jan 1, 2026Jan 1, 2026
aa-tRNA-seq
Public
Public-facing repo for aa-tRNA-seq pre-print
Python
•0•2•0•0•Updated Oct 8, 2025Oct 8, 2025
remora
Public
Methylation/modified base calling separated from basecalling.
Python
•
Other
•29•0•0•0•Updated Aug 20, 2025Aug 20, 2025

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RNA Bioscience Initiative (RBI)

All

105 repositories

leech

escapepod-rs

raer

molb-7950

aa-tRNA-seq-pipeline

clover

sracha-rs

fcount-rs

fqxv

hesselberthlab.org

trna-lifecycle-figure

bodhi-docs

sinteractive

nanopore-dna-modification-pipeline

scraps

valr

aform-rs

squiggy-positron

remote-ssh-positron

cpp11bigwig

2a-peptide-search

fuzzyfastq-rs

2026-johnson-m6a

morrison-chronic-chikv-xenium

morrison-chronic-chikv

bonito

ucsc_snapshots

charmer-rs

aa-tRNA-seq

remora

Repositories list

105 repositories