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Magic number hack for #116. need to test impact. #117

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Magic number hack for #116. need to test impact. #117

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4 changes: 3 additions & 1 deletion src/anarcii/input_data_processing/sequences.py
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Original file line number Diff line number Diff line change
Expand Up @@ -128,7 +128,8 @@ def _handle_long_sequences(self):
SCFV_WINDOW_NUM = int(SCFV_WINDOW_SIZE / SCFV_JUMP)

SHIFT = int(50 / SCFV_JUMP) # no of windows to move along: 50 residues
SCFV_THRESHOLD = 20 # Score cut off for a given window
# SCFV_THRESHOLD = 20 # Score cut off for a given window
SCFV_THRESHOLD = 25 # Magic number hack id by @eliottpark

windows = split_seq(
sequence, n_jump=SCFV_JUMP, window_size=SCFV_WINDOW_SIZE
Expand All @@ -151,6 +152,7 @@ def _handle_long_sequences(self):
# iterate through data and find minima that adhear to our conditions.
while len(data) > 1:
min_value = min(data[:SCFV_WINDOW_NUM])
# print(min_value)
# The minima must be global...
# And not at the end of the sequence..
# Or the start...
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