Test pipeline on GHA #7
jayhesselberthtest-pipeline.yaml
on: pull_request
test-pipeline
2m 40s
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1 error and 4 warnings
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test-pipeline
The process '/usr/share/miniconda/condabin/conda' failed with exit code 1
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test-pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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/usr/share/miniconda/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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test-pipeline
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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test-pipeline
LibMambaUnsatisfiableError: Encountered problems while solving:
- nothing provides snakemake-minimal 8.11.2.* needed by snakemake-8.11.2-hdfd78af_0
Could not solve for environment specs
The following packages are incompatible
└─ snakemake >=8.0 is not installable because there are no viable options
├─ snakemake [8.0.0|8.0.1|...|8.9.0] would require
│ └─ snakemake-minimal [8.0.0.* |8.0.1.* |...|8.9.0.* ], which requires
│ └─ conda-inject >=1.3.1,<2.0 , which does not exist (perhaps a missing channel);
└─ snakemake 8.11.2 would require
└─ snakemake-minimal 8.11.2.* , which does not exist (perhaps a missing channel).
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