Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Redo extraction of charging values #46

Merged
merged 3 commits into from
Jan 17, 2025
Merged

Redo extraction of charging values #46

merged 3 commits into from
Jan 17, 2025

Conversation

jayhesselberth
Copy link
Member

@jayhesselberth jayhesselberth commented Jan 17, 2025

Closes #45

Uncovered an issue wherein a small number of reads have >= 1 value for ML (charging tag). Not sure why that is, but for now we ditch them (it was < 10 reads for a large run).

Split get_final_bam_and_charg_prob into 2 rules:

  1. transfer_bam_tags
  2. get_cca_trna

Replace the awk / sed strategy of extracting chargin values with a python script.

@jayhesselberth jayhesselberth merged commit a1e46ee into main Jan 17, 2025
1 of 3 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

Rewrite get_final_bam_and_charg_prob output in python
1 participant