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fix: revert pandas.DataFrame in function signatures back to pd.DataFrame Check Build #52: Commit cf0ee5e pushed by PauBadiaM
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fix(docs): replace pd.DataFrame/Index with fully qualified pandas types Check Build #51: Commit b8158a0 pushed by PauBadiaM
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fix(docs): replace pd.DataFrame with pandas.DataFrame in pl.ranking d… Check Build #50: Commit 3e8bd26 pushed by PauBadiaM
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chore: add .ipynb_checkpoints to .gitignore Check Build #49: Commit c3d9200 pushed by PauBadiaM
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docs(changelog): update changelog entries for 0.0.2 Check Build #48: Commit 2a9a90b pushed by PauBadiaM
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docs: add faq and eval notebook to toctrees Check Build #47: Commit be40d24 pushed by PauBadiaM
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chore: bump version to 0.0.2 Check Build #46: Commit 32b80f9 pushed by PauBadiaM
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docs(faq): improve clarity, fix typos, and expand overlap vs Jaccard … Check Build #45: Commit b9e7fd0 pushed by PauBadiaM
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fix(docs): fix mudata intersphinx URL Check Build #44: Commit fa1567c pushed by PauBadiaM
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fix(docs): add mudata to intersphinx and suppress MuData ref warnings Check Build #43: Commit 5d46450 pushed by PauBadiaM
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fix(deps): add xgboost as explicit dependency Check Build #42: Commit f3d8b48 pushed by PauBadiaM
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fix(deps): update decoupler dependency and add scanpy Check Build #41: Commit 7b3f36c pushed by PauBadiaM
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docs: add Tutorials section with usage notebook Check Build #40: Commit f8f7e6d pushed by PauBadiaM
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fix: validate organism before file I/O in show_terms Check Build #39: Commit 0536853 pushed by PauBadiaM
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Resized gabstract Check Build #38: Commit 02a0c3b pushed by PauBadiaM
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Fix graphical abstract image size in README Check Build #37: Commit 7e0f08b pushed by PauBadiaM
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Add logo and graphical abstract images, update README Check Build #36: Commit e21a274 pushed by PauBadiaM
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Fix test_columns_renamed assertion in test_ds_db Check Build #35: Commit b38f9b6 pushed by PauBadiaM
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Add read_metrics function to ds module Check Build #34: Commit 8aa37c6 pushed by PauBadiaM
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Integrate decoupler Plotter class into pl functions Check Build #33: Commit 52bb5b7 pushed by PauBadiaM
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Remove unreachable mudata intersphinx mapping Check Build #32: Commit ab9a33b pushed by PauBadiaM
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Fix readthedocs build: suppress unresolvable class reference warnings Check Build #31: Commit cba4246 pushed by PauBadiaM
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Add comprehensive test suite achieving 99% line coverage Check Build #30: Commit fea0b39 pushed by PauBadiaM
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Refactored benchmark grn dict Check Build #29: Commit d1bccd0 pushed by PauBadiaM
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Updated db names Check Build #28: Commit 825baf4 pushed by PauBadiaM
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