[EPIC] PacBio multiplexing

[BenTopping]

Base epic branch for the collection of work around PacBio Multiplexing

Changes proposed in this pull request

• DPL-990 (DPL-990 - As developers we need to modify libraries to use aliquots to support revio multiplexing #1154)

  • Adds aliquots to PacBio Libraries
  • Adds rake task to migrate libraries to aliquots

• DPL-994 (DPL-994 - As a long read user when I create a new sequencing run I should be able to add libraries or pools to a well as this is how our lab process works and it will enable us to better support revio multiplexing #1214)

  • Reinstates relationship between PacBio wells and libraries
  • Updates run message to support libraries and pools
  • Updates sample sheet for initial support for libraries

• DPL-1066 (DPL-1066 As developers, we need to modify the libraries page so that it will only list the real libraries (libraries that belong to single-plex pool) traction-ui#1511)

  • Adds PacBio LibraryPoolResource. This is so the Pacbio PoolResource can access all PacBio Libraries.
  • Updates PacBio LibraryResource to only return records without pools (new libraries).

• DPL-997 (DPL-997 - As developers we need to modify the run creation process so that it allows pools and libraries to be added to a well as this matches the lab process better and supports Revio multiplexing traction-ui#1423)

  • Updates Tube by_pipeline method to pull back tubes from other bits of the PacBio pipeline.
  • Refactors tube tests and updates them to better reflect the current implementation.
  • Adds PacBio Library destruction conditional to prevent deleting libraries in runs.

[codecov]

Codecov Report

Attention: Patch coverage is 99.83137% with 1 lines in your changes are missing coverage. Please review.

Project coverage is 97.67%. Comparing base (ba2d621) to head (c9a8ab3).
Report is 10 commits behind head on develop.

Files	Patch %	Lines
lib/tasks/migrate_pacbio_aliquot_data.rake	95.65%	1 Missing ⚠️

Additional details and impacted files

@@             Coverage Diff             @@
##           develop    #1219      +/-   ##
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- Coverage    97.71%   97.67%   -0.05%     
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  Files          378      386       +8     
  Lines        11347    12051     +704     
===========================================
+ Hits         11088    11771     +683     
- Misses         259      280      +21     

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