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satijalab / seurat Public

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Fix ggplot2 v4 compatibility#10225

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BenjaminDEMAILLE wants to merge 12 commits into

satijalab:mainsatijalab/seurat:mainfrom

BenjaminDEMAILLE:fix-ggplot2-v4-compatibilityBenjaminDEMAILLE/seurat:fix-ggplot2-v4-compatibilityCopy head branch name to clipboard

Conversation Commits12 (12)Checks Files changed

Open

Fix ggplot2 v4 compatibility#10225
BenjaminDEMAILLE wants to merge 12 commits into
satijalab:mainfrom
BenjaminDEMAILLE:fix-ggplot2-v4-compatibility

Commits

Commits on Nov 27, 2025

Fix ggplot2 v4 compatibility: DarkTheme() and LabelClusters()
BenjaminDEMAILLE
committed
Add documentation for ggplot2 v4 compatibility issues
BenjaminDEMAILLE
committed
Fix SCTransform do.call slowdown by optimizing Parenting()
BenjaminDEMAILLE
committed
Fix ReadXenium QV filtering regression
BenjaminDEMAILLE
committed
Add validation for scale.data in FindTransferAnchors
BenjaminDEMAILLE
committed
Fix TransferData crash when prediction.scores contain NaN
BenjaminDEMAILLE
committed
Fix VariableFeaturePlot crash with multiple assays
BenjaminDEMAILLE
committed
Update R/utilities.R

BenjaminDEMAILLE
and
Copilot
authored
Update R/visualization.R

BenjaminDEMAILLE
and
Copilot
authored
Update R/visualization.R

BenjaminDEMAILLE
and
Copilot
authored
Update R/visualization.R

BenjaminDEMAILLE
and
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Apply suggestions from code review

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