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Backport PR #2102 on branch 0.12.x (chore: deprecate AnnData.*_keys methods)

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Status: Merged (completed).

scverse/anndatanumber 2108

#2108 In scverse/anndata;

· by meeseeksmachine was closed on Sep 8, 2025

Backport PR #2138 on branch 0.12.x (fix: suppress matplotlib warnings)

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Status: Merged (completed).

scverse/anndatanumber 2139

#2139 In scverse/anndata;

· by meeseeksmachine was closed on Oct 1, 2025

Backport PR #2134 on branch 0.12.x (fix: write iospec directly with sparse dataset)

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topic: backed

type: sparse 🫥

Status: Merged (completed).

scverse/anndatanumber 2140

#2140 In scverse/anndata;

· by meeseeksmachine was closed on Oct 1, 2025

Backport PR #2092 on branch 0.12.x (fix: writing views of backed anndata objects)

backend: hdf5

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Status: Merged (completed).

scverse/anndatanumber 2098

#2098 In scverse/anndata;

· by meeseeksmachine was closed on Aug 29, 2025

Backport PR #2097 on branch 0.12.x (fix: reallow h5 slash writing)

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Status: Merged (completed).

scverse/anndatanumber 2100

#2100 In scverse/anndata;

· by meeseeksmachine was closed on Aug 29, 2025

Backport PR #2104 on branch 0.12.x (ci: clean up coverage reporting)

Status: Merged (completed).

scverse/anndatanumber 2105

#2105 In scverse/anndata;

· by meeseeksmachine was closed on Sep 2, 2025

Fix index types

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Status: Merged (completed).

scverse/anndatanumber 2067

#2067 In scverse/anndata;

· by flying-sheep was closed on Jul 31, 2025

Backport PR #2067 on branch 0.12.x (Fix index types)

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Status: Merged (completed).

scverse/anndatanumber 2069

#2069 In scverse/anndata;

· by meeseeksmachine was closed on Jul 31, 2025

Backport PR #2115 on branch 0.12.x (ci: fix coverage)

run-gpu-ci

Status: Merged (completed).

scverse/anndatanumber 2116

#2116 In scverse/anndata;

· by meeseeksmachine was closed on Sep 15, 2025

Backport PR #2024 on branch 0.12.x (chore: remove zstd note in zarr v3 guide)

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Status: Merged (completed).

scverse/anndatanumber 2113

#2113 In scverse/anndata;

· by meeseeksmachine was closed on Sep 15, 2025

Backport PR #2053 on branch 0.12.x (fix: unbound dask)

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Status: Merged (completed).

scverse/anndatanumber 2120

#2120 In scverse/anndata;

· by meeseeksmachine was closed on Sep 16, 2025

Backport PR #2084 on branch 0.12.x (fix: add DaskArrayView writing)

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Status: Merged (completed).

scverse/anndatanumber 2086

#2086 In scverse/anndata;

· by meeseeksmachine was closed on Aug 21, 2025

Backport PR #2130 on branch 0.12.x (fix: bound asv)

benchmark

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Status: Merged (completed).

scverse/anndatanumber 2131

#2131 In scverse/anndata;

· by meeseeksmachine was closed on Sep 25, 2025

Backport PR #1318 on branch 0.12.x (fix: use standard version API)

Status: Merged (completed).

scverse/anndatanumber 2132

#2132 In scverse/anndata;

· by meeseeksmachine was closed on Sep 25, 2025

Backport PR #2125 on branch 0.12.x (ci: skip broken Click version)

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Status: Merged (completed).

scverse/anndatanumber 2126

#2126 In scverse/anndata;

· by meeseeksmachine was closed on Sep 22, 2025

ci: Update Ruff

dev process

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Status: Merged (completed).

scverse/anndatanumber 2112

#2112 In scverse/anndata;

· by flying-sheep was closed on Sep 15, 2025

ci: fix coverage

Status: Merged (completed).

scverse/anndatanumber 2115

#2115 In scverse/anndata;

· by flying-sheep was closed on Sep 15, 2025

ci: skip broken Click version

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Status: Merged (completed).

scverse/anndatanumber 2125

#2125 In scverse/anndata;

· by flying-sheep was closed on Sep 22, 2025

fix: suppress matplotlib warnings

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Status: Merged (completed).

scverse/anndatanumber 2138

#2138 In scverse/anndata;

· by ilan-gold was closed on Oct 1, 2025

fix: remove mamba backend for asv

benchmark

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Status: Merged (completed).

scverse/anndatanumber 2129

#2129 In scverse/anndata;

· by ilan-gold was closed on Sep 29, 2025

Backport PR #2122 (fix: merge strategies for concat_on_disk)

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Status: Merged (completed).

scverse/anndatanumber 2142

#2142 In scverse/anndata;

· by ilan-gold was closed on Oct 2, 2025

fix: allow writing to v3/2 store when setting is v2/3 if possible

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Status: Merged (completed).

scverse/anndatanumber 2051

#2051 In scverse/anndata;

· by ilan-gold was closed on Jul 29, 2025

Backport PR #2048 on branch 0.12.x ((chore): Re-introduce strict warnings)

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Status: Merged (completed).

scverse/anndatanumber 2055

#2055 In scverse/anndata;

· by meeseeksmachine was closed on Jul 28, 2025

[pre-commit.ci] pre-commit autoupdate

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Status: Merged (completed).

scverse/anndatanumber 2056

#2056 In scverse/anndata;

· by pre-commit-ci was closed on Jul 29, 2025

(fix): skip X writing when X is None

Status: Merged (completed).

scverse/anndatanumber 2054

#2054 In scverse/anndata;

· by flying-sheep was closed on Jul 29, 2025