Updated the rankby_obsm function to optionally accept keys to test as…

[jhaberbe]

Updated the rankby_obsm function to optionally accept keys to test as an argument.

[PauBadiaM]

@jhaberbe looks good! If you don't mind, could you also add a small description of the new argument in the docstring? Thanks!

[jhaberbe]

Hiya, just added it.

[codecov-commenter]

Codecov Report

❌ Patch coverage is 50.00000% with 1 line in your changes missing coverage. Please review.
✅ Project coverage is 94.95%. Comparing base (545c96a) to head (a492d45).
⚠️ Report is 8 commits behind head on main.

Files with missing lines	Patch %	Lines
src/decoupler/tl/_rankby_obsm.py	50.00%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #226      +/-   ##
==========================================
+ Coverage   94.90%   94.95%   +0.04%     
==========================================
  Files          76       76              
  Lines        3929     3927       -2     
==========================================
  Hits         3729     3729              
+ Misses        200      198       -2     

Files with missing lines	Coverage Δ
src/decoupler/tl/_rankby_obsm.py	97.82% <50.00%> (-2.18%)	⬇️

... and 1 file with indirect coverage changes

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• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

[jhaberbe]

It looks like its failing when pulling up the example datasets:

dc.ds.msvisium()
dc.ds.hsctgfb()

and it seems to be expecting gzip'd file formats for some of the dataframes? I don't know why updating the pyproject and changelog would cause that.

after looking at the link for: https://pubmed.ncbi.nlm.nih.gov/static-page/down_bethesda.html?acc=GSE151251&format=file&file=GSE151251%5FHSCs%5FCtrl%2Evs%2EHSCs%5FTGFb%2Ecounts%2Etsv%2Egz

it looks like the site is down for maintenance. I captured a web-archive of it here. Crazy bad luck, lol.

https://web.archive.org/web/20250726190035/https://pubmed.ncbi.nlm.nih.gov/static-page/down_bethesda.html?acc=GSE151251&format=file&file=GSE151251%5FHSCs%5FCtrl%2Evs%2EHSCs%5FTGFb%2Ecounts%2Etsv%2Egz

I guess just wait until later tomorrow, and try it again?