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Updated the rankby_obsm function to optionally accept keys to test as… #226

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Merged
merged 7 commits into from
Jul 27, 2025
Merged

Updated the rankby_obsm function to optionally accept keys to test as… #226

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6aaa107
Updated the rankby_obsm function to optionally accept keys to test as…
jhaberbe Jul 25, 2025
520cc98
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 25, 2025
7062a54
Updated to make it "is not None"
jhaberbe Jul 25, 2025
9e45127
Updated the docstring.
jhaberbe Jul 25, 2025
7c60807
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 25, 2025
979e356
Update pyproject.toml
PauBadiaM Jul 26, 2025
a492d45
Update CHANGELOG.md
PauBadiaM Jul 26, 2025
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8 changes: 5 additions & 3 deletions src/decoupler/tl/_rankby_obsm.py
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Original file line number Diff line number Diff line change
Expand Up @@ -31,9 +31,7 @@ def _input_rank_obsm(

@docs.dedent
def rankby_obsm(
adata: AnnData,
key: str,
uns_key: str | None = "rank_obsm",
adata: AnnData, key: str, uns_key: str | None = "rank_obsm", obs_keys: list | None = None
) -> None | pd.DataFrame:
"""
Ranks features in ``adata.obsm`` by the significance of their association with metadata in ``adata.obs``.
Expand Down Expand Up @@ -68,6 +66,10 @@ def rankby_obsm(
assert isinstance(uns_key, str) or uns_key is None, "uns_key must be str or None"
# Extract
df, x_vars, y_vars = _input_rank_obsm(adata=adata, key=key)

if obs_keys is not None:
x_vars = obs_keys

# Test
res = []
for x_var in x_vars:
Expand Down
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