v1.6.6
What's Changed
Changed
- Updating CI/CD by @timtreis in #981
- Docs: Edit the argument documentation of
n_jobsof theparallelizefunction by @selmanozleyen in #987 parallelizesets numba cores to 1 by @selmanozleyen in #1008- Re-implementating co_occurrence() by @wenjie1991 in #975
- Deprecate Python 3.10 by @selmanozleyen in #1031
- Replacing fixed size tuples as return types by @selmanozleyen in #1043
- zarr v3 support by @LucaMarconato in #1040* Change niche flavor to cellcharter_simple and default distance = 3 by @marcovarrone in #978
Fixed
- Fix outline color behavior by @Sonja-Stockhaus in #1006
- Fix IO warning by @Zethson in #979
- Ligrec Reproducibility and Bug Fix in Sparse Data. by @selmanozleyen in #991
- Fix logger warnings by @emmanuel-ferdman in #1004
- Numba warning fix by @selmanozleyen in #1002
- Fix: sepal numba compilation options changes the results significantly by @selmanozleyen in #1045
- Fix the
__version__deprecated warning by @selmanozleyen in #1056
Added
- Run notebooks in CI by @selmanozleyen in #1013
- Method to detect specimens in H&E images by @timtreis in #1044
- fix: repair the docs by @flying-sheep in #1062
- Add helper functions to tile image for inference by @timtreis in #1053
Other Changes
- chore: fix messed-up yaml formatting by @flying-sheep in #1024
- Update CI by @flying-sheep in #1025
- Moving to uv + hatch by @selmanozleyen in #1029
- chore: remove unused imports by @flying-sheep in #1058
- Update template to v0.6.0 by @scverse-bot in #1041
- remove duplicated issue templates by @Zethson in #1064
- now creating folder if it doesn't exist by @timtreis in #1066
New Contributors
- @selmanozleyen made their first contribution in #987
- @Sonja-Stockhaus made their first contribution in #1006
- @emmanuel-ferdman made their first contribution in #1004
- @wenjie1991 made their first contribution in #975
- @LucaMarconato made their first contribution in #1040
Full Changelog: v1.6.5...v1.6.6