v1.6.6

What's Changed

Changed

• Updating CI/CD by @timtreis in #981
• Docs: Edit the argument documentation of n_jobs of the parallelize function by @selmanozleyen in #987
• parallelize sets numba cores to 1 by @selmanozleyen in #1008
• Re-implementating co_occurrence() by @wenjie1991 in #975
• Deprecate Python 3.10 by @selmanozleyen in #1031
• Replacing fixed size tuples as return types by @selmanozleyen in #1043
• zarr v3 support by @LucaMarconato in #1040* Change niche flavor to cellcharter_simple and default distance = 3 by @marcovarrone in #978

Fixed

• Fix outline color behavior by @Sonja-Stockhaus in #1006
• Fix IO warning by @Zethson in #979
• Ligrec Reproducibility and Bug Fix in Sparse Data. by @selmanozleyen in #991
• Fix logger warnings by @emmanuel-ferdman in #1004
• Numba warning fix by @selmanozleyen in #1002
• Fix: sepal numba compilation options changes the results significantly by @selmanozleyen in #1045
• Fix the __version__ deprecated warning by @selmanozleyen in #1056

Added

• Run notebooks in CI by @selmanozleyen in #1013
• Method to detect specimens in H&E images by @timtreis in #1044
• fix: repair the docs by @flying-sheep in #1062
• Add helper functions to tile image for inference by @timtreis in #1053

Other Changes

• chore: fix messed-up yaml formatting by @flying-sheep in #1024
• Update CI by @flying-sheep in #1025
• Moving to uv + hatch by @selmanozleyen in #1029
• chore: remove unused imports by @flying-sheep in #1058
• Update template to v0.6.0 by @scverse-bot in #1041
• remove duplicated issue templates by @Zethson in #1064
• now creating folder if it doesn't exist by @timtreis in #1066

New Contributors

• @selmanozleyen made their first contribution in #987
• @Sonja-Stockhaus made their first contribution in #1006
• @emmanuel-ferdman made their first contribution in #1004
• @wenjie1991 made their first contribution in #975
• @LucaMarconato made their first contribution in #1040

Full Changelog: v1.6.5...v1.6.6