v0.4.1

• Added a medical disclaimer (research purposes only) to the HTML report
• Added PCGR software version to the report

Allelic support & MSI status

• fixed bugs filed by users
• support for specification of allelic depth/fraction (SNVs/Indels)
• prediction of microsatellite instability
• export of datatables to Excel/CSV
• analysis of MSI/mutational signatures is optional
• improved interactivity of clinical evidence items

v0.3.4

• code documentation

v0.3.3

• automatic decomposition of multiallelic sites
• 'chr' in CHROM column permitted

v0.3.2

• fixed some bugs found by users
• stringent check of INFO tags in query VCF (not coinciding with those produced by PCGR)

v0.3.1

• fixed CNA bug

v0.3

• output folder can be specified by user
• all docker commands now run as non-root
• added run script version check against Docker image version
• lowered dpi in R markdown to 72 (resulting in reduction of file sizes of HTML reports)
• changed name of run script to pcgr.py

v0.2

run_pcgr update