1.0.563

What's Changed

File Reading

• MsAlign Mass Spec File Reading by @nbollis in #868
• Combine MsAlign Explainer by @nbollis in #875
• timsTOF files are now tolerant to corrupted scans @Alexander-Sol in #888
• timsTOF file dynamic connections can be repeatedly opened/closed, enabling MetaDraw @Alexander-Sol in #890

Quantification

• Enable IsoTracker to search specifically on certain PTM motifs @RayMSMS in #876
• IsoTracker will choose the XIC with the most IDs as the Reference XIC for alignment @RayMSMS in #874
• FlashLFQ Refactoring, addition of FlashLFQ Parameters, and making MbrScorer more robust (will slightly change MBR results) @Alexander-Sol in #861, #877, #887 #861

Misc.

• Reorganize the IDs from IsoTracker and MBR to avoid the crashing @RayMSMS in #885
• Averagine Generalization by @nbollis in #883
• Change the access modifier of Modification from private set to protected set. by @RayMSMS in #893

Full Changelog: 1.0.562...1.0.563