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Registration fails with latest starfish (and scikit-image)

bugAn issue with an existing featureAn issue with an existing feature

Status: Open.

#2062 In spacetx/starfish;

· iimog opened on Apr 1, 2025

DeprecationWarning: magic(...) is deprecated since IPython 0.13 (warning added in 8.1)

bugAn issue with an existing featureAn issue with an existing feature

low priority

Status: Open.

#2060 In spacetx/starfish;

· shachafl opened on Mar 24, 2025

Add MacOS testing to Github Actions workflow

Status: Open.

#2057 In spacetx/starfish;

· shachafl opened on Mar 21, 2025

 ·  

Drop support for Python 3.9

Dropping support for Python 3.9 due to critical vulnerability with a dependency

dependenciesPull requests that update a dependency filePull requests that update a dependency file

docsdocumentation improvementsdocumentation improvements

high priority

pythonPull requests that update Python codePull requests that update Python code

Status: Open.

#2056 In spacetx/starfish;

· shachafl opened on Mar 21, 2025

 ·  

Drop support for Python 3.9

Using fork() in a multi-threaded environment can cause deadlocks

bugAn issue with an existing featureAn issue with an existing feature

Status: Open.

#2055 In spacetx/starfish;

· shachafl opened on Mar 21, 2025

xarray versions 2023.9+ introduce new errors in testing

bugAn issue with an existing featureAn issue with an existing feature

dependenciesPull requests that update a dependency filePull requests that update a dependency file

Status: Open.

#2031 In spacetx/starfish;

· shachafl opened on Nov 13, 2024

Upgrading jsonschema to 4.18+ to resolve security issues with older dependencies breaks starfish

bugAn issue with an existing featureAn issue with an existing feature

dependenciesPull requests that update a dependency filePull requests that update a dependency file

Status: Open.

#2020 In spacetx/starfish;

· shachafl opened on Sep 15, 2024

barcodeBuildFunc modifies external variables

bugAn issue with an existing featureAn issue with an existing feature

Status: Open.

#2007 In spacetx/starfish;

· guoyang-github opened on Nov 16, 2023

Possible parameter inversion in LearnTransform.Translation class

bugAn issue with an existing featureAn issue with an existing feature

Status: Open.

#2005 In spacetx/starfish;

· guoyang-github opened on Nov 15, 2023

ValueError when running BlobDetector

bugAn issue with an existing featureAn issue with an existing feature

Status: Open.

#2003 In spacetx/starfish;

· iimog opened on Mar 28, 2023

Link to raw data is not working

bugAn issue with an existing featureAn issue with an existing feature

Status: Open.

#1937 In spacetx/starfish;

· mstemmer opened on Mar 10, 2021

"ValueError: in1 and in2 should have the same dimensionality" when "is_volume=True" for Filter.DeconvolvePSF

bugAn issue with an existing featureAn issue with an existing feature

Status: Open.

#1912 In spacetx/starfish;

· aschrader5 opened on Nov 4, 2020