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Keep haplotypes in vg chunk that don't extend far enough - #4501

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adamnovak wants to merge 7 commits into
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fix-chunk-haplotypes
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Keep haplotypes in vg chunk that don't extend far enough#4501
adamnovak wants to merge 7 commits into
masterfrom
fix-chunk-haplotypes

Add learnings from Jouni about working with haplotypes that end

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