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@adamnovak adamnovak released this 23 Mar 19:40
· 31 commits to master since this release
v1.73.0
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Download for Linux

Don't forget to mark the static binary executable:

chmod +x vg

Docker Image: quay.io/vgteam/vg:v1.73.0

Buildable Source Tarball: vg-v1.73.0.tar.gz

Includes source for vg and all submodules. Use this instead of Github's "Source Code" downloads; those will not build as they do not include code for bundled dependencies that the vg build process needs.

This release includes:

  • Off-reference cover logic moved from vg deconstruct to vg paths. deconstruct and call now have prototype logic to fully take advantage of it.
  • Fix regression in vg clip, depth, simplify and potentially some uses of deconstruct and call, that results from a change that ignores haplotypes in .vg files (to be consistent with how .gbz files would have been treated).
  • Better distance indexing in complex DAG snarls. Distance indexes should be re-made.
  • vg wiki manpage links to subcommand sections now work
  • Add option --exclude-sample to vg paths
  • Stable GAF sorting is actually stable.
  • vg surject -S no longer loses read names with GAM input
  • Added the total number of recombination in a chain, recombinant anchor are now marked in the chain dump file
  • Very minor vg giraffe chaining mode speedup
  • vg surject now takes --read-length short and --read-length long, and sets low-complexity pruning correctly.
  • vg giraffe's built-in surjection now uses low-complexity pruning by default for long reads.
  • vg giraffe now has --no-XXX and --XXX flag options in pairs.
  • R plotting scripts no longer insist on installing all their dependencies
  • Add #define compile-time option to print info about sampled haplotypes in vg haplotypes
  • vg call -C can now be used with -a
  • GBZ-to-GBZ chunking with vg chunk --gbz (can choose all components or components by contig name).
  • vg convert options --gbwtgraph-algorithm and --drop-haplotypes work correctly together in GBZ to GFA conversion.
  • vg describe works better with old obsolete files.
  • Add vg sim --use-average-length option

Updated Submodules

The gbwt, gbwtgraph, and libbdsg submodules have been updated.

Assets 5
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