v1.6.3 - [07/25/2025]

Fixed

• [Pre-MycoSNP workflow] GC content calculation for closest GAMBIT match (Reference_GC field in pre-mycosnp-summary.csv) excluded lowercase (soft-masked) bases, i.e. "c" and "g", leading to underestimates for Reference_GC. This fix includes lowercase "g" and "c" in the GC content calculation in bin/pre-mycosnp-stats.sh, for both the closest GAMBIT match and the sample assembly. However, the sample assembly shouldn't contain any soft-masked bases to begin with, so this shouldn't result in any differences in Sample_Assembly_GC.