feat: BTB #250
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feat: BTB #250
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finished testing the LocalNeighborhood. Moving to make the dockerfile
BTB should be ready to be implemented into SPRAS.
with motivating context
This was referenced Jun 3, 2025
annaritz
reviewed
Jun 4, 2025
| if not Path(sources).exists() or not Path(targets).exists() or not Path(edges).exists(): | ||
| raise ValueError('Missing input file') | ||
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| # Testing for btb index errors |
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This might not be relevant anymore (if it is, it should be in prepare_inputs()). Try commenting out and checking.
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In other PRs, there's another similar check in the run() function. This was because the error's raised in the docker image but pytest can't see it. Might be a flaw of the way our run tests are organized.
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| edges.to_csv(filename_map["edges"], sep="\t", index=False, | ||
| columns=["Interactor1", "Interactor2", "Weight"], | ||
| header=False) |
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This should be where the "btb index check" code might go.
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supersedes #150, #168, and #204 - link to algorithm