0.33.1

Deprecation announcements

The code in apis\aws-batch is no longer supported and will be removed in a future release.

Changes:

• 078788f Upgrade Embedded to 2.24.1 (#732)
• 4ff6701 Bump nightly build release branch to 2.24 (#738)
• c5468ae Migrate macOS CI to macos-12 runner (#735)
• f570702 pin numpy < 2 (#734)

This list of changes was auto generated.

0.33.0

Changes:

• 7ff0bac Upgrade Embedded to 2.24.0 (#727)
• 09afd34 Lazily import dask (#724)
• 2f3ad87 Bump nightly build release branch to 2.23 (#723)
• 7bc5d5d remove unnecessary and problematic lines from CLI test (#722)
• 87e332c Sample stats improvements (#719)
• 02621c1 Add switch for variant stats array version (#720)
• 1416d09 Writer changes for Variant Stats (#698)

This list of changes was auto generated.

0.32.0

Changes:

• bb7a970 update to tiledb 2.23.0 (#718)
• a5aaf7a [Spark] Add option to use a bed Array (#648)
• 7cc19c1 Set java/spark version from git tag (#716)
• 3940593 Read BED files stored as TileDB files (#712)
• 69c30d4 Sample stats improvements (#708)
• c72ac5b Fix an issue reading BED arrays from tiledb URIs (#706)
• d5682e1 Use HTSlib 1.19.0 on Windows. (#703)
• 964be5c Fix python cmake issue (#702)
• d7bc780 Update python build system (#701)

This list of changes was auto generated.

0.31.1

Changes:

• f636342 Update java/spark for version 0.31.1 (#715)
• 4d71db6 Read BED files stored as TileDB files (#712) (#714)
• d2a8d93 Sample stats improvements (#708) (#711)
• ba8ace7 Fix an issue reading BED arrays from tiledb URIs (#706) (#709)

This list of changes was auto generated.

0.30.1

Changes:

• cf53fd7 Java/Spark 0.30.1 (#704)
• 548d56e update Embedded to 2.21.2 (#695)
• edd553b Array size utility script (#699)
• 68b8f1c Update backport action (#697)
• b227def Open vcf_header and data arrays in parallel (#696)
• 53f5c78 Do not disable vcpkg in nightly builds. (#692)

0.31.0

Changes:

• 06b9d30 Upgrade Embedded to 2.22.0 (#691)
• 23565d2 Bump nightly release branch to 2.21 (#700)
• bebf2ad Create sample stats during ingestion (#690)
• edd553b Array size utility script (#699)
• 68b8f1c Update backport action (#697)
• b227def Open vcf_header and data arrays in parallel (#696)
• 53f5c78 Do not disable vcpkg in nightly builds. (#693)

This list of changes was auto generated.

0.29.2

Changes:

• d72ab4a Update Java/Spark to 0.29.2 (#689)
• 906ff1d [Backport release-0.29] Move to c++20 (#684)
• b0eb87f Bump spdlog version to v1.12.0 (#685) (#686)

This list of changes was auto generated.

0.30.0

Changes:

• c78434f Bump spdlog version to v1.12.0 (#685)
• 1d269bf add cmake option to build spdlog from source
• 8a439ad bump Ubuntu distro for Docker
• 6e8e1e2 fix formatting of logging messages
• 8ffcc62 move to c++20
• 18bd5a2 update to tiledb 2.21.1 (#683)
• 0216ef1 Java/Spark 0.30.0 (#681)
• c07b0d4 update to tiledb 2.21.0 (#676)
• 8197381 Import pyarrow-hotfix (#669)
• 65954c0 nightly: install TileDB-Py from source and combine Linux/macOS jobs (#679)

See More

• 28c5e5d More robust handling of info END fields (#672)
• 1712c9b Bump macOS nightly release branch to 2.20 (#674)
• 3723c2c Disable dask query-planning (#673)
• b3df71e Bump nightly release branch to 2.20 (#666)
• f4215d5 Update Embedded to 2.20.1 (#665)

This list of changes was auto generated.

0.29.1

Changes:

• 559fe19 Update Java/Spark to 0.29.1, Embedded to 2.20.1 (#678) [ #665 ]
• 4179024 More robust handling of info END fields (#672) (#677)

This list of changes was auto generated.

0.29.0

Changes:

• ab46847 Update Embedded to 2.20 (#654)
• e83a8fc fix type hint (#658)
• 073a050 [JAVA-API] Support reads using a BED array (#646)

This list of changes was auto generated.