add vrhyme tool

[Minamehr]

Hi – This pull request adds the tool vRhyme to the repository.
Thanks!

[bgruening]

You have 268 files in this PR. Are all files used?

[Minamehr]

You have 268 files in this PR. Are all files used?

The test-data folder has many files due to multiple test cases to check different functions. I’ll reduce it to one or two representative tests. However, even a single test produces around 50 output files — I’ll reduce them as much as possible.

[bgruening]

Do you check all these generated outputs? If a test generates 50 files to you check/diff all the 50 files? I can not see that in your PR

[Minamehr]

Do you check all these generated outputs? If a test generates 50 files to you check/diff all the 50 files? I can not see that in your PR

Yes, you're right. Some outputs like alternate_bins_membership and alternate_bins_summary are collections with many files (e.g., 19 elements). I checked representative files (4 out of 19). But I’ve removed those outputs for now.

[bgruening]

You should only remove the file you are NOT checking. The files that are useless in this PR. Also consider to use asserts to check proprieties of files, this way you don't need to store them at all in git. This does not work for all usecases but for many.

[Minamehr]

Hi Saim,
Thanks for your effort on the vRhyme PR (#1600). I saw that you pushed some changes and merged it — I really appreciate you jumping in to help.
However, I was still actively working on the wrapper to solve a specific issue, and the dependencies weren’t finalized yet. It hadn’t been fully tested either.
Since it was merged a bit early, I’ll go ahead and open a follow-up PR to clean things up and restore the changes I was working on.

[SaimMomin12]

Hi @Minamehr, Sorry, I didn’t realize you were still actively working on the PR as it hadn’t seen much activity for a couple of weeks and wasn’t in draft, so when Bjoern asked me about it, I thought I could help move it forward by amending changes and merging. Totally fine to open a follow-up PR with the remaining changes. Also, maybe consider marking WIP PRs as draft next time so it’s clearer they’re still in progress. :)

[Minamehr]

Hey, no worries at all — thanks for the follow-up and the tip! I’ll make sure to mark it as draft next time to avoid confusion. 😊