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    163 repositories

    • PioGrowth

      Public
      App for analysis of optical density measurements produced mainly with a PioReactors, see https://pioreactor.com/
      Python
      •
      MIT License
      •0•1•4•2•Updated Mar 20, 2026Mar 20, 2026

    • nf-modules

      Public
      quantms and other bigbio workflows modules in nf-core, nextflow standards
      Nextflow
      •
      MIT License
      •3•0•0•1•Updated Mar 20, 2026Mar 20, 2026

    • growthcurves

      Public
      Calculate with different methods (models, sliding window, etc.) the most relevant growth curve parameters
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•1•12•4•Updated Mar 18, 2026Mar 18, 2026

    • pankb

      Public
      The Pangenome Knowledge Base (PanKB) serves as an up-to-date resource for pangenomics research methods and the dissemination of results and currently offers bas…
      HTML
      •
      MIT License
      •1•5•0•0•Updated Mar 17, 2026Mar 17, 2026

    • biggr_models

      Public
      CSS
      •
      Other
      •0•0•0•0•Updated Mar 17, 2026Mar 17, 2026

    • dsp_notes

      Public
      Public notes and hints of the Data Science Platform.
      Python
      •1•1•0•5•Updated Mar 17, 2026Mar 17, 2026

    • dsp_course_proteomics_intro

      Public
      Introduction to massspectrometry-based proteomics.
      Jupyter Notebook
      •3•1•2•1•Updated Mar 17, 2026Mar 17, 2026

    • dsp_course_metabolomics_intro

      Public
      About Introduction to massspectrometry-based metabolomics (raw data processsing and downstream analysis).
      Python
      •0•0•0•0•Updated Mar 17, 2026Mar 17, 2026

    • lifelike

      Public
      Turning big data into contextualized knowledge. Lifelike is a modern application platform for data extraction, analysis and visualization.
      pythondockerangular
      pythondockerangularbioinformaticsbig-datahelmknowledge-graphscientific-computing
      Python
      •1•1•0•0•Updated Mar 13, 2026Mar 13, 2026

    • quantms-containers

      Public
      DIANN docker container and OpenMS release for quantms
      Dockerfile
      •
      Apache License 2.0
      •4•0•0•0•Updated Mar 13, 2026Mar 13, 2026

    • guidelines

      Public
      Guidelines for employees and collaborators at BRIGHT, with the goal of educating readers and minimizing the likelihood of issues arising with our computational …
      best-practicesguidelines
      best-practicesguidelines
      0•3•0•0•Updated Mar 12, 2026Mar 12, 2026

    • data-catalog-resources

      Public
      This is the resource page for Biosustain Data Catalog
      JavaScript
      •
      GNU General Public License v3.0
      •1•3•10•0•Updated Mar 12, 2026Mar 12, 2026

    • dsp_nfcore_documentation

      Public
      Documentation (parameters and other settings) for nf-core and nf-core template derived pipelines used at BRIGHT.
      Python
      •
      GNU General Public License v3.0
      •0•1•0•1•Updated Mar 7, 2026Mar 7, 2026

    • raddim

      Public
      Repository for: "High-throughput methods enabling random duplications, deletions or nucleotide-constrained mutagenesis of entire DNA motifs"
      Jupyter Notebook
      •0•0•0•0•Updated Mar 4, 2026Mar 4, 2026

    • growthcurves_app

      Public
      Growth Curve apps for Plate Reader and Pio Reactor experiments using the growthcurves Python Package
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 3, 2026Mar 3, 2026

    • salb_GEM_biosustain

      Public
      GEM for Streptomyces albus J1074
      gemmodelmetabolism
      gemmodelmetabolismstreptomycessalb-gem
      HTML
      •
      MIT License
      •0•1•0•0•Updated Feb 17, 2026Feb 17, 2026

    • benchling-resources

      Public
      Benchling resources created at DTU Biosustain.
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Feb 17, 2026Feb 17, 2026

    • python_package

      Public template
      Example Python package
      Python
      •
      GNU General Public License v3.0
      •1•3•2•2•Updated Feb 9, 2026Feb 9, 2026

    • croissance

      Public
      Tool for estimating growth rates from microbial growth curves
      bioinformaticsbiologycurve-fitting
      bioinformaticsbiologycurve-fittinggrowth-curves
      Python
      •
      Other
      •12•31•2•1•Updated Feb 4, 2026Feb 4, 2026

    • dsp_microbialFoodsCatalog

      Public
      Code to build a microbial foods MAG and microbial gene catalog
      HTML
      •0•0•0•1•Updated Jan 31, 2026Jan 31, 2026

    • dsp_nfcore_mag

      Public
      Repository for documentation, tips and tricks, best practices for running nf-core/MAG
      HTML
      •0•0•0•0•Updated Jan 31, 2026Jan 31, 2026

    • pankb_llm

      Public
      An LLM-based pangenomics chatbot integrated into the PanKB website.
      mongodbazurechatbot
      mongodbazurechatbotpangenomicscosmosdbstreamlitllmvectordbgenai
      Python
      •1•0•0•0•Updated Jan 20, 2026Jan 20, 2026

    • pankb_db

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 19, 2026Jan 19, 2026

    • cobradb

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Dec 30, 2025Dec 30, 2025

    • biggr_models_data

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Dec 23, 2025Dec 23, 2025

    • biggr_maps

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 23, 2025Dec 23, 2025

    • biggr

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 23, 2025Dec 23, 2025

    • dsp_docker_training

      Public
      Introduction to Docker
      Python
      •1•0•1•0•Updated Dec 17, 2025Dec 17, 2025

    • mycol

      Public
      Fungal spore counting
      Jupyter Notebook
      •1•0•0•0•Updated Dec 3, 2025Dec 3, 2025

    • pankb_data_prep

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 24, 2025Nov 24, 2025