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validate_dockstore_yaml.yml
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Fixed genomicsdb lookup validate-dockstore-yaml #2484: Commit b966963 pushed by jonn-smith
25s jts_malaria_pipeline_optimization
jts_malaria_pipeline_optimization
25s
ONE TIME ONLY: skip Sniffles validate-dockstore-yaml #2483: Commit 6416582 pushed by SHuang-Broad
7s sh_update_wgs_callers_outliers_gregor_pbsv_discover_oom_andPBSV_only
sh_update_wgs_callers_outliers_gregor_pbsv_discover_oom_andPBSV_only
7s
ONE TIME ONLY: skip Sniffles validate-dockstore-yaml #2482: Commit b328fbf pushed by SHuang-Broad
6s sh_update_wgs_callers_outliers_gregor_pbsv_discover_oom_andPBSV_only
sh_update_wgs_callers_outliers_gregor_pbsv_discover_oom_andPBSV_only
6s
samtools release 0.1.23 was taken away and replaced with 0.1.23.1 validate-dockstore-yaml #2481: Commit b378669 pushed by SHuang-Broad
5s sh_update_gcloud_samtools_for_libcurl
sh_update_gcloud_samtools_for_libcurl
5s
ONE TIME ONLY: skip Sniffles validate-dockstore-yaml #2480: Commit b30dbba pushed by SHuang-Broad
6s sh_update_wgs_callers_outliers_gregor_pbsv_discover_oom_andPBSV_only
sh_update_wgs_callers_outliers_gregor_pbsv_discover_oom_andPBSV_only
6s
ONE TIME ONLY: skip Sniffles validate-dockstore-yaml #2479: Commit 65f5680 pushed by SHuang-Broad
5s sh_update_wgs_callers_outliers_gregor_pbsv_discover_oom_andPBSV_only
sh_update_wgs_callers_outliers_gregor_pbsv_discover_oom_andPBSV_only
5s
ONE TIME ONLY: skip Sniffles validate-dockstore-yaml #2478: Commit 0803ddb pushed by SHuang-Broad
5s sh_update_wgs_callers_outliers_gregor_pbsv_discover_oom_andPBSV_only
sh_update_wgs_callers_outliers_gregor_pbsv_discover_oom_andPBSV_only
5s
Updated ExtractVariantAnnotations with better error messages. validate-dockstore-yaml #2477: Commit 73f1890 pushed by jonn-smith
20s jts_malaria_pipeline_optimization
jts_malaria_pipeline_optimization
20s
Fixing error with comm receiving unsorted files. validate-dockstore-yaml #2476: Commit 84c53f5 pushed by jonn-smith
19s jts_malaria_pipeline_optimization
jts_malaria_pipeline_optimization
19s
Changed memory for Functional annotation. Minor updates. validate-dockstore-yaml #2475: Commit 6eeede0 pushed by jonn-smith
17s jts_malaria_pipeline_optimization
jts_malaria_pipeline_optimization
17s
Fixed typo. validate-dockstore-yaml #2474: Commit 8ae255f pushed by jonn-smith
15s jts_malaria_pipeline_optimization
jts_malaria_pipeline_optimization
15s
Fixing Tar extract on FunctionalAnnotation so it supports non-gzipped. validate-dockstore-yaml #2473: Commit 453edb4 pushed by jonn-smith
22s jts_malaria_pipeline_optimization
jts_malaria_pipeline_optimization
22s
Fixing issue with set command and if blocks. validate-dockstore-yaml #2472: Commit 9863a5b pushed by jonn-smith
23s je_addDoradoWDL
je_addDoradoWDL
23s
Added missing mkdir validate-dockstore-yaml #2471: Commit db3b126 pushed by jonn-smith
21s je_addDoradoWDL
je_addDoradoWDL
21s
Fixed file delocalization from basecall task validate-dockstore-yaml #2470: Commit 8867834 pushed by jonn-smith
22s je_addDoradoWDL
je_addDoradoWDL
22s
Fixed outputs of Dorado task. validate-dockstore-yaml #2469: Commit 4656394 pushed by jonn-smith
42s je_addDoradoWDL
je_addDoradoWDL
42s
Added some debugging code. validate-dockstore-yaml #2468: Commit d821e56 pushed by jonn-smith
19s je_addDoradoWDL
je_addDoradoWDL
19s
Added Dorado basecaller for ONT data. validate-dockstore-yaml #2467: Commit a6879e1 pushed by jonn-smith
32s je_addDoradoWDL
je_addDoradoWDL
32s
Added Dorado basecaller for ONT data. validate-dockstore-yaml #2466: Commit 7c97f04 pushed by jonn-smith
8s je_addDoradoWDL
je_addDoradoWDL
8s
Fixed output dir for dorado validate-dockstore-yaml #2465: Commit 847626c pushed by jonn-smith
7s je_addDoradoWDL
je_addDoradoWDL
7s
Updated WDL to use latest dorado release validate-dockstore-yaml #2464: Commit af1559a pushed by jonn-smith
7s je_addDoradoWDL
je_addDoradoWDL
7s
Updated dorado to v1.4.0 validate-dockstore-yaml #2463: Commit 93fb5fb pushed by jonn-smith
9s je_addDoradoWDL
je_addDoradoWDL
9s
Fixed typo validate-dockstore-yaml #2462: Commit 44348f6 pushed by jonn-smith
6s je_addDoradoWDL
je_addDoradoWDL
6s
Reverting to v100 GPU validate-dockstore-yaml #2461: Commit 798acf0 pushed by jonn-smith
5s je_addDoradoWDL
je_addDoradoWDL
5s
Updated GPU settings for Dorado to try to fix queued status. validate-dockstore-yaml #2460: Commit 037a3cd pushed by jonn-smith
9s je_addDoradoWDL
je_addDoradoWDL
9s