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Copy file name to clipboardexpand all lines: README.md
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fgbio
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====
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A set of tools to analyze genomic data with a focus on Next Generation Sequencing. This readme document is mostly for developers/contributors and those attempting to build the project from source.
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A set of tools to analyze genomic data with a focus on Next Generation Sequencing.
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This readme document is mostly for developers/contributors and those attempting to build the project from source.
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Detailed user documentation is available on the [project website](http://fulcrumgenomics.github.io/fgbio/) including [tool usage](http://fulcrumgenomics.github.io/fgbio/tools/latest) and [documentation of metrics produced](http://fulcrumgenomics.github.io/fgbio/metrics/latest). Detailed developer documentation can be found [here](http://javadoc.io/doc/com.fulcrumgenomics/fgbio_2.13).
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<!---toc start-->
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*[Quick Installation](#quick-installation)
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*[Goals](#goals)
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*[Overview](#overview)
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*[List of tools](#list-of-tools)
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<!---toc end-->
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# Quick Installation
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The [conda](https://conda.io/) package manager (configured with [bioconda channels](https://bioconda.github.io/)) can be used to quickly install fgbio:
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```
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conda install fgbio
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```
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To install fgbio without extra dependencies (e.g. [R](https://www.r-project.org/)), use the command:
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```
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conda install fgbio-minimal
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```
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# Goals
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There are many toolkits available for analyzing genomic data; fgbio does not aim to be all things to all people but is specifically focused on providing:
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