feat: add optical duplicate tagging to GroupReadsByUmi

[yfarjoun]

fixes #1013

[codecov]

Codecov Report

Attention: Patch coverage is 92.10526% with 3 lines in your changes missing coverage. Please review.

Project coverage is 95.68%. Comparing base (6ca7733) to head (e33c422).
Report is 9 commits behind head on main.

Files with missing lines	Patch %	Lines
...cala/com/fulcrumgenomics/umi/GroupReadsByUmi.scala	92.10%	3 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #1029      +/-   ##
==========================================
+ Coverage   95.62%   95.68%   +0.05%     
==========================================
  Files         126      126              
  Lines        7388     7601     +213     
  Branches      510      510              
==========================================
+ Hits         7065     7273     +208     
- Misses        323      328       +5     

Flag	Coverage Δ
unittests	95.68% <92.10%> (+0.05%)	⬆️

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