[ENH] Add validate_sequence utility for DNA/RNA/protein input validation#625
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Vaishnav88sk wants to merge 1 commit into
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[ENH] Add validate_sequence utility for DNA/RNA/protein input validation#625Vaishnav88sk wants to merge 1 commit into
Vaishnav88sk wants to merge 1 commit into
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Add centralized validation module with two functions: - validate_sequence(): raises ValueError with clear message showing invalid characters and their exact positions - is_valid_sequence(): boolean alternative (no exceptions) Supports DNA (ACGT), RNA (ACGU), and protein (20 standard amino acids). Case-insensitive. Includes 17 tests covering all molecule types, edge cases, error messages, and type checking.
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Reference Issues/PRs
Fixes #619
What does this implement/fix? Explain your changes.
Introduces a centralized validation module
pyaptamer/utils/_validate.pyto ensure input sequence integrity across the library.validate_sequence(sequence, molecule_type): RaisesValueErrorwith positions of invalid characters.is_valid_sequence(sequence, molecule_type): Boolean check.Supports DNA, RNA, and the 20 standard amino acids.
What should a reviewer concentrate their feedback on?
Did you add any tests for the change?
Yes, added
pyaptamer/utils/tests/test_validate.pywith 17 tests covering all molecule types and invalid inputs.Any other comments?
N/A
PR checklist