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Update gatk4 mutect2 to add --alleles parameter for force calling#9020

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maxulysse merged 7 commits into
nf-core:masterfrom
jchchiu:update-gatk4-mutect2
Sep 10, 2025
Merged

Update gatk4 mutect2 to add --alleles parameter for force calling#9020
maxulysse merged 7 commits into
nf-core:masterfrom
jchchiu:update-gatk4-mutect2

update subworkflows to rename and reorder force call parameter

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