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Update gatk4 mutect2 to add --alleles parameter for force calling#9020

Merged

maxulysse merged 7 commits into

nf-core:masternf-core/modules:masterfrom

jchchiu:update-gatk4-mutect2jchchiu/modules:update-gatk4-mutect2Copy head branch name to clipboard

Sep 10, 2025

Conversation Commits7 (7)Checks Files changed

Merged

Update gatk4 mutect2 to add --alleles parameter for force calling#9020
maxulysse merged 7 commits into
nf-core:masterfrom
jchchiu:update-gatk4-mutect2

Commits

Commits on Sep 8, 2025

Add mutect2 --alleles force call parameter
jchchiu
committed
update mutect2 tests
jchchiu
committed
update subworkflow tests
jchchiu
committed
fix formatting
jchchiu
committed
Merge branch 'nf-core:master' into update-gatk4-mutect2
jchchiu
authored

Commits on Sep 10, 2025

update mutect2 module to rename and reorder parameter
jchchiu
committed
update subworkflows to rename and reorder force call parameter
jchchiu
committed

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