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- Status: Open.#2224 In nf-core/sarek;
- Status: Open.#2223 In nf-core/sarek;
- Status: Open.#2222 In nf-core/sarek;
- Status: Open.#2215 In nf-core/sarek;
- Status: Open.#2212 In nf-core/sarek;
Bug: ConfigParseException in SENTIEON_DEDUP due to undeclared variable (Nextflow 24.10.0+)
bugSomething isn't workingSomething isn't workingStatus: Open.#2206 In nf-core/sarek;Incorrect VCF file paths in the automatically generated samplesheet
bugSomething isn't workingSomething isn't workingStatus: Open.#2204 In nf-core/sarek;Samplesheet validation issue for --step annotate
bugSomething isn't workingSomething isn't workingStatus: Open.#2201 In nf-core/sarek;Sarek Concatenate VCF option doesn't concatenate output VCFs.
bugSomething isn't workingSomething isn't workingStatus: Open.#2200 In nf-core/sarek;Reference GATK.GRCh37 not working
bugSomething isn't workingSomething isn't workingStatus: Open.#2195 In nf-core/sarek;Parabrics BQSR runs without .tbi indexes (known_sites_indels_tbi not passed to PARABRICKS_FQ2BAM)
bugSomething isn't workingSomething isn't workingStatus: Open.#2193 In nf-core/sarek;- Status: Open.#2192 In nf-core/sarek;