Repositories list

• npc_lims

  Public
  Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.

  Python

  •

  MIT License

  •1•0•4•0•Updated Mar 26, 2026Mar 26, 2026

• npc_sessions

  Public
  Tools for accessing and packaging data from behavior and epyhys sessions from the Mindscope Neuropixels team, in the cloud.

  Python

  •1•2•55•0•Updated Mar 26, 2026Mar 26, 2026

• MIES

  Public
  Multichannel Igor Electrophysiology Suite

  electrophysiologyigor-prosupported

  electrophysiologyigor-prosupported

  IGOR Pro

  •

  Other

  •9•29•281•15•Updated Mar 26, 2026Mar 26, 2026

• aibs-informatics-aws-utils

  Public
  Library of generic Python AWS utils used by the AIBS Informatics "Marmot" team

  pythonawsaibs-informatics

  pythonawsaibs-informatics

  Python

  •

  Other

  •0•1•2•1•Updated Mar 26, 2026Mar 26, 2026

• neuron-proofreader

  Public
  NeuronProofreader is a Python library for automated proofreading of split and merge mistakes in neuron reconstructions.

  Python

  •

  MIT License

  •0•8•0•1•Updated Mar 26, 2026Mar 26, 2026

• mtrain_regimens

  Public
  Repository to track training stages and regimens for visual behavior

  Python

  •

  Other

  •4•3•14•0•Updated Mar 26, 2026Mar 26, 2026

• biofile-finder

  Public
  An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in co…

  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •4•16•100•3•Updated Mar 25, 2026Mar 25, 2026

• vis

  Public
  Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats

  visualizationwebglbig-data+ 1

  visualizationwebglbig-datatoolkit

  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •1•6•12•7•Updated Mar 25, 2026Mar 25, 2026

• deep_ccf_registration

  Public
  Arbitrary modality registration to CCFv3 using deep learning

  deep-learningimage-registrationcommon-coordinate-framwork

  deep-learningimage-registrationcommon-coordinate-framwork

  Jupyter Notebook

  •0•2•0•0•Updated Mar 25, 2026Mar 25, 2026

• PeakRankR

  Public
  Package to rank enhancer peaks for cloning

  R

  •

  Other

  •0•2•3•0•Updated Mar 25, 2026Mar 25, 2026

• MMIDAS

  Public
  Jupyter Notebook

  •1•4•1•0•Updated Mar 24, 2026Mar 24, 2026

• BG_Astrocyte_Multimodal

  Public
  Jupyter Notebook

  •0•2•0•0•Updated Mar 24, 2026Mar 24, 2026

• aibs-informatics-core

  Public
  Core library to be used as foundation across multiple projects

  aibs-informatics

  aibs-informatics

  Python

  •

  Other

  •0•2•0•0•Updated Mar 23, 2026Mar 23, 2026

• aibs-informatics-aws-lambda

  Public
  AWS Lambda library for AIBS Informatics lambda functions

  aibs-informatics

  aibs-informatics

  Python

  •

  Other

  •0•1•0•0•Updated Mar 23, 2026Mar 23, 2026

• npc_sessions_cache

  Public
  Scripts, notebooks and plots that operate on NWB or NWB-like objects from `npc_sessions` in the cloud.

  Jupyter Notebook

  •0•0•0•1•Updated Mar 23, 2026Mar 23, 2026

• jem

  Public
  Repository containing JEM (JSON Electrophysiology Metadata), a web-form for logging metadata during slice electrophysiology experiments.

  HTML

  •

  Other

  •4•5•0•0•Updated Mar 23, 2026Mar 23, 2026

• dynamic_routing_analysis

  Public
  Tools for accessing, processing and presenting data from Dynamic Routing experiments.

  Jupyter Notebook

  •0•2•0•0•Updated Mar 20, 2026Mar 20, 2026

• aibs-informatics-cdk-lib

  Public
  Library for AWS CDK Constructs related to AIBS Informatics Services

  aibs-informatics

  aibs-informatics

  Python

  •

  Other

  •0•1•0•0•Updated Mar 20, 2026Mar 20, 2026

• np_config

  Public
  Config fetching from file or Zookeeper - with local backup - repackaging code from AIBS mpeconfig.

  Python

  •1•0•1•0•Updated Mar 20, 2026Mar 20, 2026

• scrattch

  Public
  Single cell RNA-seq analysis for transcriptomic type characterization

  rumbrellatranscriptomics+ 1

  rumbrellatranscriptomicsscrattch

  HTML

  •

  Other

  •5•38•2•0•Updated Mar 20, 2026Mar 20, 2026

• scrattch.patchseq

  Public
  R

  •1•1•0•0•Updated Mar 20, 2026Mar 20, 2026

• axonal_connectomics

  Public
  Repository for tools developed for axonal connectomics

  Jupyter Notebook

  •

  Other

  •1•2•5•2•Updated Mar 19, 2026Mar 19, 2026

• np_notebooks

  Public
  Jupyter Notebook

  •3•0•0•0•Updated Mar 18, 2026Mar 18, 2026

• np_logging

  Public
  Pre-configured file, web, and email logging for Mindscope Neuropixels projects, repackaging code from AIBS mpeconfig.

  Python

  •0•0•0•0•Updated Mar 18, 2026Mar 18, 2026

• npc_shields

  Public
  Tools for Neuropixels probe insertion into SHIELD implants: providing suggested targets, recording actual insertions, storing notes.

  Python

  •0•0•0•0•Updated Mar 18, 2026Mar 18, 2026

• FISHsim

  Public
  Python

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Mar 18, 2026Mar 18, 2026

• cell_type_mapper

  Public
  Repository for storing prototype functionality implementations for the BKP

  Python

  •

  Other

  •9•47•7•2•Updated Mar 18, 2026Mar 18, 2026

• ZeroMQ-XOP

  Public
  The ZeroMQ XOP enables Igor Pro to interface over the network using a ZeroMQ messaging layer and JSON as message format

  C

  •

  BSD 3-Clause "New" or "Revised" License

  •8•9•10•1•Updated Mar 18, 2026Mar 18, 2026

• connectomics_at_cosyne

  Public
  Workshop description and resources for Connectomics at COSYNE 2026 .

  Python

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Mar 17, 2026Mar 17, 2026

• npc_stim

  Public
  Tools for accessing and processing stim data, compatible with data in the cloud.

  Python

  •

  MIT License

  •0•0•0•0•Updated Mar 16, 2026Mar 16, 2026