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    • Explore gnomAD datasets on the web
      TypeScript
      MIT License
      478115714Updated Mar 19, 2025Mar 19, 2025
    • Code to run analyses and generate figures for JUNIPER: Reconstructing Transmission Events from Next-Generation Sequencing Data at Scale
      R
      0000Updated Mar 19, 2025Mar 19, 2025
    • Epigenomics Program pipeline to analyze SHARE-seq data.
      WDL
      MIT License
      320280Updated Mar 18, 2025Mar 18, 2025
    • gatk

      Public
      Official code repository for GATK versions 4 and up
      Java
      Other
      6021.8k1.2k132Updated Mar 18, 2025Mar 18, 2025
    • Scala
      BSD 3-Clause "New" or "Revised" License
      43107Updated Mar 18, 2025Mar 18, 2025
    • This repository hosts DSP AppSec internal infrastructure apps deployed in GKE.
      Python
      BSD 3-Clause "New" or "Revised" License
      2603Updated Mar 18, 2025Mar 18, 2025
    • DropSift

      Public
      cell caller for sn/snRNA sequence data
      R
      Other
      0000Updated Mar 18, 2025Mar 18, 2025
    • hail-based pipelines for annotating variant callsets and exporting them to elasticsearch
      Python
      MIT License
      2023225Updated Mar 18, 2025Mar 18, 2025
    • GitHub Action workflows that can be shared by multiple repositories
      BSD 3-Clause "New" or "Revised" License
      1030Updated Mar 18, 2025Mar 18, 2025
    • Python library for parsing a Linux sudoers file
      Python
      BSD 3-Clause "New" or "Revised" License
      7722Updated Mar 18, 2025Mar 18, 2025
    • Puppet module to manage the SentinelOne agent
      Ruby
      BSD 3-Clause "New" or "Revised" License
      2110Updated Mar 18, 2025Mar 18, 2025
    • Puppet module for installing and configuring the Qualys Cloud Agent
      Ruby
      BSD 3-Clause "New" or "Revised" License
      8320Updated Mar 18, 2025Mar 18, 2025
    • Puppet module for controlling the qpage service
      Ruby
      BSD 3-Clause "New" or "Revised" License
      0100Updated Mar 18, 2025Mar 18, 2025
    • Puppet module to control the pdsh application
      Ruby
      0000Updated Mar 18, 2025Mar 18, 2025
    • Ruby
      5000Updated Mar 18, 2025Mar 18, 2025
    • Vue
      BSD 3-Clause "New" or "Revised" License
      1210Updated Mar 18, 2025Mar 18, 2025
    • Puppet module for installing and configuring amavis-new
      Puppet
      BSD 3-Clause "New" or "Revised" License
      2000Updated Mar 18, 2025Mar 18, 2025
    • warp

      Public
      WDL Analysis Research Pipelines
      WDL
      BSD 3-Clause "New" or "Revised" License
      102210520Updated Mar 18, 2025Mar 18, 2025
    • jati

      Public
      DSL support library for Rust
      Rust
      BSD 3-Clause "New" or "Revised" License
      0100Updated Mar 18, 2025Mar 18, 2025
    • mitograph

      Public
      Rust
      0000Updated Mar 18, 2025Mar 18, 2025
    • File Ingest Pipeline for Single Cell Portal
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      0501Updated Mar 18, 2025Mar 18, 2025
    • rawls

      Public
      Rawls service for DSDE
      Scala
      BSD 3-Clause "New" or "Revised" License
      426013Updated Mar 18, 2025Mar 18, 2025
    • Blog for the gnomAD project
      JavaScript
      BSD 3-Clause "New" or "Revised" License
      0374Updated Mar 18, 2025Mar 18, 2025
    • Python
      0404Updated Mar 18, 2025Mar 18, 2025
    • Code for the DepMap portal at depmap.org
      Python
      BSD 2-Clause "Simplified" License
      1709Updated Mar 18, 2025Mar 18, 2025
    • jump_hub

      Public
      Collection of JUMP documentation and projects for internal and public consumption
      Python
      Creative Commons Zero v1.0 Universal
      1370Updated Mar 18, 2025Mar 18, 2025
    • ml4h

      Public
      Python
      Other
      241283021Updated Mar 18, 2025Mar 18, 2025
    • Monorepo of methods implemented for the Aggregator
      Python
      BSD 3-Clause "New" or "Revised" License
      2107Updated Mar 18, 2025Mar 18, 2025
    • Python
      1300Updated Mar 18, 2025Mar 18, 2025
    • seqr-helm

      Public
      Helm charts for the seqr project
      Python
      BSD 3-Clause "New" or "Revised" License
      1300Updated Mar 18, 2025Mar 18, 2025