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    • gnomad-browser

      Public
      Explore gnomAD datasets on the web
      javascriptgenomicsgnomad
      TypeScript
      •
      MIT License
      •47•81•157•14•Updated Mar 19, 2025Mar 19, 2025

    • juniper-analyses

      Public
      Code to run analyses and generate figures for JUNIPER: Reconstructing Transmission Events from Next-Generation Sequencing Data at Scale
      R
      •0•0•0•0•Updated Mar 19, 2025Mar 19, 2025

    • epi-SHARE-seq-pipeline

      Public
      Epigenomics Program pipeline to analyze SHARE-seq data.
      WDL
      •
      MIT License
      •3•20•28•0•Updated Mar 18, 2025Mar 18, 2025

    • gatk

      Public
      Official code repository for GATK versions 4 and up
      sciencebioinformaticsgenomicsgenomengssequencingdnasparkgatk
      Java
      •
      Other
      •602•1.8k•1.2k•132•Updated Mar 18, 2025Mar 18, 2025

    • firecloud-orchestration

      Public
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •4•31•0•7•Updated Mar 18, 2025Mar 18, 2025

    • dsp-appsec-infrastructure-apps

      Public
      This repository hosts DSP AppSec internal infrastructure apps deployed in GKE.
      application-securityappsecsecurity-scannersecure-developmentsecurity-automationsecurity-toolsdevsecopssecurity-scanappsecurityappsec-tools
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•6•0•3•Updated Mar 18, 2025Mar 18, 2025

    • DropSift

      Public
      cell caller for sn/snRNA sequence data
      R
      •
      Other
      •0•0•0•0•Updated Mar 18, 2025Mar 18, 2025

    • seqr-loading-pipelines

      Public
      hail-based pipelines for annotating variant callsets and exporting them to elasticsearch
      Python
      •
      MIT License
      •20•23•22•5•Updated Mar 18, 2025Mar 18, 2025

    • shared-workflows

      Public
      GitHub Action workflows that can be shared by multiple repositories
      BSD 3-Clause "New" or "Revised" License
      •1•0•3•0•Updated Mar 18, 2025Mar 18, 2025

    • python-sudoers

      Public
      Python library for parsing a Linux sudoers file
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •7•7•2•2•Updated Mar 18, 2025Mar 18, 2025

    • puppet-sentinelone_agent

      Public
      Puppet module to manage the SentinelOne agent
      Ruby
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•1•0•Updated Mar 18, 2025Mar 18, 2025

    • puppet-qualys_agent

      Public
      Puppet module for installing and configuring the Qualys Cloud Agent
      Ruby
      •
      BSD 3-Clause "New" or "Revised" License
      •8•3•2•0•Updated Mar 18, 2025Mar 18, 2025

    • puppet-qpage

      Public
      Puppet module for controlling the qpage service
      Ruby
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Mar 18, 2025Mar 18, 2025

    • puppet-pdsh

      Public
      Puppet module to control the pdsh application
      Ruby
      •0•0•0•0•Updated Mar 18, 2025Mar 18, 2025

    • puppet-gcloudsdk

      Public
      Ruby
      •5•0•0•0•Updated Mar 18, 2025Mar 18, 2025

    • dig-dug-portal

      Public
      Vue
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•1•0•Updated Mar 18, 2025Mar 18, 2025

    • puppet-amavisd

      Public
      Puppet module for installing and configuring amavis-new
      Puppet
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Mar 18, 2025Mar 18, 2025

    • warp

      Public
      WDL Analysis Research Pipelines
      WDL
      •
      BSD 3-Clause "New" or "Revised" License
      •102•210•5•20•Updated Mar 18, 2025Mar 18, 2025

    • jati

      Public
      DSL support library for Rust
      Rust
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Mar 18, 2025Mar 18, 2025

    • mitograph

      Public
      Rust
      •0•0•0•0•Updated Mar 18, 2025Mar 18, 2025

    • scp-ingest-pipeline

      Public
      File Ingest Pipeline for Single Cell Portal
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•5•0•1•Updated Mar 18, 2025Mar 18, 2025

    • rawls

      Public
      Rawls service for DSDE
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •4•26•0•13•Updated Mar 18, 2025Mar 18, 2025

    • gnomad-blog

      Public
      Blog for the gnomAD project
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•7•4•Updated Mar 18, 2025Mar 18, 2025

    • ops-terra-utils

      Public
      Python
      •0•4•0•4•Updated Mar 18, 2025Mar 18, 2025

    • depmap-portal

      Public
      Code for the DepMap portal at depmap.org
      Python
      •
      BSD 2-Clause "Simplified" License
      •1•7•0•9•Updated Mar 18, 2025Mar 18, 2025

    • jump_hub

      Public
      Collection of JUMP documentation and projects for internal and public consumption
      compbioprofiling
      Python
      •
      Creative Commons Zero v1.0 Universal
      •1•3•7•0•Updated Mar 18, 2025Mar 18, 2025

    • ml4h

      Public
      Python
      •
      Other
      •24•128•30•21•Updated Mar 18, 2025Mar 18, 2025

    • dig-aggregator-methods

      Public
      Monorepo of methods implemented for the Aggregator
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•0•7•Updated Mar 18, 2025Mar 18, 2025

    • beta-binomial-regression

      Public
      Python
      •1•3•0•0•Updated Mar 18, 2025Mar 18, 2025

    • seqr-helm

      Public
      Helm charts for the seqr project
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•3•0•0•Updated Mar 18, 2025Mar 18, 2025