All

76 repositories

riker
Public
Spiritual successor to picard for sequencing qc
Rust
•
MIT License
•3•46•1•0•Updated Jun 27, 2026Jun 27, 2026
fgumi
Public
High-performance UMI tools for NGS data analysis
rust bioinformatics genomics
rust bioinformatics genomics ngs sequencing umi duplex-sequencing consensus-calling
Rust
•
MIT License
•2•46•10•10•Updated Jun 27, 2026Jun 27, 2026
methylsieve
Public
Fast, robust filtering of unconverted reads in methylation sequencing
Rust
•
MIT License
•0•0•0•0•Updated Jun 27, 2026Jun 27, 2026
ferro-hgvs
Public
A high-performance HGVS variant nomenclature parser and normalizer written in Rust
rust parser bioinformatics
rust parser bioinformatics genomics hgvs variant-nomenclature
Rust
•
MIT License
•3•24•24•13•Updated Jun 27, 2026Jun 27, 2026
twistcgp
Public
Nextflow pipeline for Twist Comprehensive Genomic Profiling (CGP) panel analysis
bioinformatics genomics nextflow
bioinformatics genomics nextflow variant-calling oncology nf-core
Nextflow
•2•5•23•3•Updated Jun 26, 2026Jun 26, 2026
nf-core-modules
Public
Repository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow
•
MIT License
•1.1k•0•0•0•Updated Jun 26, 2026Jun 26, 2026
chelae
Public
Fast, highly accurate, read-trimming for NGS data.
genomics ngs trimming
genomics ngs trimming
Rust
•
MIT License
•0•10•0•1•Updated Jun 26, 2026Jun 26, 2026
dupblaster
Public
Blazingly fast, streaming duplicate detection for NGS data
Rust
•
MIT License
•0•15•1•0•Updated Jun 26, 2026Jun 26, 2026
fqtk
Public
Fast FASTQ sample demultiplexing in Rust.
rust bioinformatics genomics
rust bioinformatics genomics fastq demultiplexing
Rust
•
MIT License
•2•70•6•1•Updated Jun 18, 2026Jun 18, 2026
aws-setup
Public
a repo to develop a simple script that installs everything we need on a new AWS instance
Shell
•0•0•0•1•Updated Jun 18, 2026Jun 18, 2026
pybwa
Public
Python language bindings for bwa
bioinformatics genomics
bioinformatics genomics
Python
•
MIT License
•1•12•1•0•Updated Jun 16, 2026Jun 16, 2026
fgpyo
Public
Quality of life improvements for Bioinformatics in Python.
python bioinformatics genomics
python bioinformatics genomics
Python
•
Other
•4•33•23•3•Updated May 21, 2026May 21, 2026
fglatch
Public
CLI and Python extensions for the LatchBio platform.
python cli bioinformatics
python cli bioinformatics latchbio
Python
•
MIT License
•0•0•18•10•Updated May 21, 2026May 21, 2026
fgbio
Public
Tools for working with genomic and high throughput sequencing data.
bioinformatics scala genomics
bioinformatics scala genomics ngs umi analyzing-genomic-data fgbio molecular-indexes
Scala
•
MIT License
•77•368•47•16•Updated May 20, 2026May 20, 2026
sopt
Public
An argument parsing library for Scala
scala argument-parsing
scala argument-parsing
Scala
•
MIT License
•0•12•4•1•Updated May 19, 2026May 19, 2026
fgoxide
Public
Quality of life improvements in Rust.
rust bioinformatics utilities
rust bioinformatics utilities
Rust
•
MIT License
•4•6•3•4•Updated May 19, 2026May 19, 2026
pybedlite
Public
Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)
python bioinformatics genomics
python bioinformatics genomics bed-files
Python
•
Other
•1•15•2•1•Updated May 18, 2026May 18, 2026
bioconda-recipes
Public
Conda recipes for the bioconda channel.
Shell
•
MIT License
•4k•0•0•0•Updated May 6, 2026May 6, 2026
ref-solver
Public
Identify which human reference genome was used to align a BAM/SAM/CRAM file
rust bioinformatics genomics
rust bioinformatics genomics sam bam reference-genome cram hg19 grch37 grch38
Rust
•
MIT License
•2•33•1•1•Updated Apr 30, 2026Apr 30, 2026
guide-counter
Public
A better, faster way to count guides in CRISPR screens.
rust bioinformatics genomics
rust bioinformatics genomics crispr
Rust
•
MIT License
•4•35•8•4•Updated Apr 30, 2026Apr 30, 2026
fqgrep
Public
Grep for FASTQ files
rust bioinformatics genomics
rust bioinformatics genomics sequence-search grep fastq
Rust
•
MIT License
•5•104•1•3•Updated Apr 30, 2026Apr 30, 2026
pooled-writer
Public
A pooled writer and compressor library in Rust.
rust bioinformatics compression
rust bioinformatics compression
Rust
•
MIT License
•0•4•0•0•Updated Apr 30, 2026Apr 30, 2026
k2tools
Public
Tools for working with the outputs of kraken2
Rust
•
MIT License
•0•1•0•0•Updated Apr 30, 2026Apr 30, 2026
bgzf
Public
BGZF compression library in Rust
rust bioinformatics compression
rust bioinformatics compression genomics
Rust
•0•6•0•0•Updated Apr 30, 2026Apr 30, 2026
read-structure
Public
Read structures in rust
rust bioinformatics genomics
rust bioinformatics genomics sequencing
Rust
•
MIT License
•3•3•0•0•Updated Apr 30, 2026Apr 30, 2026
nf-itdepends
Public
A Nextflow plugin that restores @Grab (Groovy Grape) dependency resolution for lib/ classes
grape groovy bioinformatics
grape groovy bioinformatics nextflow ivy nextflow-plugin
Groovy
•
MIT License
•0•5•0•0•Updated Apr 29, 2026Apr 29, 2026
fetch-through-merge-base
Public
A GitHub Action for fetching PR commits through the merge-base
Shell
•
MIT License
•1•0•1•0•Updated Apr 22, 2026Apr 22, 2026
gha-timer
Public
Time and group logs for GitHub actions
Python
•
MIT License
•0•2•0•0•Updated Apr 21, 2026Apr 21, 2026
fetch-through-merge-base-mock
Public
Test repository for fetch-through-merge-base
Shell
•0•0•0•0•Updated Apr 21, 2026Apr 21, 2026
jlibdeflate
Public
Java JNI wrapper around libdeflate for faster DEFLATE/gzip/zip on the JVM
Java
•
MIT License
•0•6•0•1•Updated Apr 8, 2026Apr 8, 2026

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Fulcrum Genomics

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76 repositories

riker

fgumi

methylsieve

ferro-hgvs

twistcgp

nf-core-modules

chelae

dupblaster

fqtk

aws-setup

pybwa

fgpyo

fglatch

fgbio

sopt

fgoxide

pybedlite

bioconda-recipes

ref-solver

guide-counter

fqgrep

pooled-writer

k2tools

bgzf

read-structure

nf-itdepends

fetch-through-merge-base

gha-timer

fetch-through-merge-base-mock

jlibdeflate

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Repositories list

76 repositories