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@netneurolab Network Neuroscience Lab

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    50 repositories

    • netneurotools

      Public
      Useful tools from the Network Neuroscience Lab
      pythonneuroimaginghacktoberfest
      pythonneuroimaginghacktoberfestbrain-imagingbrain-networks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •38•120•4•4•Updated Jul 31, 2026Jul 31, 2026

    • Farahani_Age_Metabolism

      Public
      Aging and metabolism contribute separately to brain-body health
      Python
      •0•0•0•0•Updated Jul 23, 2026Jul 23, 2026

    • Farahani_Brain_Metastases

      Public
      Cerebral vasculature shapes the spatial patterning of brain metastases
      Python
      •0•0•0•0•Updated Jul 23, 2026Jul 23, 2026

    • neurosieve

      Public
      LLM-filtered neurosynth meta-analytic maps
      Python
      •0•1•0•0•Updated Jul 21, 2026Jul 21, 2026

    • bazinet_generative_model

      Public
      Code supporting Bazinet et al., 2026, "Homophily-informed generative models of brain maps"
      Python
      •0•0•0•0•Updated Jul 10, 2026Jul 10, 2026

    • abagen

      Public
      A toolbox for working with Allen Human Brain Atlas microarray expression data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •52•14•0•1•Updated Jul 7, 2026Jul 7, 2026

    • taheri_aquaporin-four

      Public
      Repository for the project "Spatial organization of AQP4 channels in the human brain: links with perfusion, edema, and disease vulnerability"
      Python
      •2•0•0•0•Updated Jun 29, 2026Jun 29, 2026

    • netneurolab.github.io

      Public
      Network Neuroscience Lab Website
      SCSS
      •1.3k•0•0•0•Updated Jun 16, 2026Jun 16, 2026

    • neuromaps

      Public
      A toolbox for comparing brain maps
      pythonneuroimaginghacktoberfest
      pythonneuroimaginghacktoberfestbrain-imaging
      Python
      •
      Other
      •66•338•25•7•Updated Jun 13, 2026Jun 13, 2026

    • milisav_hierarchical_modularity

      Public
      Data and code supporting Milisav et al., 2025 "Neuromorphic hierarchical modular reservoirs"
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated May 23, 2026May 23, 2026

    • zhou_interpolates

      Public
      Repository for the project "Benchmarking spatial interpolation methods for brain maps"
      Jupyter Notebook
      •1•1•0•0•Updated May 19, 2026May 19, 2026

    • hansen_receptorvar

      Public
      Data and code supporting Hansen et al., 2026, Brain Structure and Function "Inter-individual variability of neurotransmitter receptor and transporter density in…
      Python
      •0•4•0•0•Updated May 8, 2026May 8, 2026

    • hansen_synaptome

      Public
      Data and code supporting Hansen et al., 2026, PLOS Biology "Synapse types are spatially associated with regional hemodynamics in the mouse brain"
      Python
      •0•8•0•0•Updated May 8, 2026May 8, 2026

    • neuromaps-mouse

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•5•2•1•Updated Apr 28, 2026Apr 28, 2026

    • pourmajidian_metabolism-genes

      Public
      Python
      •1•2•0•0•Updated Apr 17, 2026Apr 17, 2026

    • Farahani_brainstemsc

      Public
      Brainstem-augmented structural connectome
      Python
      •0•0•0•0•Updated Apr 10, 2026Apr 10, 2026

    • ceballos_neuropeptide-organization

      Public
      Repository for the project "Organization of neuropeptide systems in the human brain"
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•9•0•0•Updated Mar 17, 2026Mar 17, 2026

    • bazinet_spins

      Public
      Code supporting Bazinet et al., 2025, "The effect of spherical projection on spin tests for brain maps" (Imaging Neuroscience)
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Nov 17, 2025Nov 17, 2025

    • pypyls

      Public
      A Python implementation of Partial Least Squares (PLS) decomposition
      Python
      •
      GNU General Public License v2.0
      •38•85•16•3•Updated Sep 18, 2025Sep 18, 2025

    • Farahani_Blood_Perfusion

      Public
      Cerebral blood perfusion across biological systems and the human lifespan
      Python
      •0•4•0•0•Updated Aug 28, 2025Aug 28, 2025

    • Farahani_ALS

      Public
      Network spreading and local biological vulnerability in amyotrophic lateral sclerosis
      Python
      •1•4•0•0•Updated Aug 28, 2025Aug 28, 2025

    • luppi-cognitive-matching

      Public
      MATLAB code for Luppi et al (2025) "General anaesthesia reduces the uniqueness of brain functional connectivity across individuals and across species", Nature H…
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Jul 24, 2025Jul 24, 2025

    • hansen_many_networks

      Public
      Data and code supporting Hansen et al., 2023 PLOS Biology "Integrating multimodal and multiscale connectivity blueprints of the human cerebral cortex in health …
      Python
      •5•36•0•0•Updated Jul 22, 2025Jul 22, 2025

    • pypmi

      Public
      A very small toolbox for working with data from the Parkinson's Progression Markers Initiative (PPMI)
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •10•0•0•0•Updated Mar 8, 2025Mar 8, 2025

    • luppi-neurosynth-control

      Public
      Code for Luppi et al (2024) Nature Biomedical Engineering
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •3•4•1•0•Updated Feb 2, 2025Feb 2, 2025

    • luppi-genes-receptors-macaque

      Public
      MATLAB code for Luppi et al (2024) "Benchmarking macaque brain gene expression for horizontal and vertical translation"
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • liu_fc-pyspi

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•13•0•0•Updated Jan 16, 2025Jan 16, 2025

    • markello_transcriptome

      Public
      Code and documentation supporting Markello et al, 2021, "Standardizing workflows in imaging transcriptomics with the abagen toolbox" (Biorxiv)
      TeX
      •
      BSD 3-Clause "New" or "Revised" License
      •3•10•1•0•Updated Jan 12, 2025Jan 12, 2025

    • markello_ppmisnf

      Public
      Code supporting the recent preprint Markello et al., 2020
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •8•36•2•3•Updated Jan 12, 2025Jan 12, 2025

    • liu_meg-scfc

      Public
      Python
      •1•1•0•0•Updated Jan 12, 2025Jan 12, 2025
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