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@netneurolab Network Neuroscience Lab

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    44 repositories

    • netneurolab.github.io

      Public
      Network Neuroscience Lab Website
      SCSS
      •1.3k•0•0•0•Updated Feb 2, 2026Feb 2, 2026

    • netneurotools

      Public
      Useful tools from the Network Neuroscience Lab
      pythonneuroimaginghacktoberfestbrain-imagingbrain-networks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •37•109•4•5•Updated Jan 29, 2026Jan 29, 2026

    • ceballos_neuropeptide-organization

      Public
      Repository for the project "Mapping neuropeptide signaling in the human brain"
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•7•0•0•Updated Jan 26, 2026Jan 26, 2026

    • neuromaps-mouse

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•0•Updated Jan 22, 2026Jan 22, 2026

    • hansen_synaptome

      Public
      Data and code supporting Hansen et al., 2025, bioRxiv "Synaptome architecture shapes regional dynamics in the mouse brain"
      Python
      •0•4•0•0•Updated Jan 19, 2026Jan 19, 2026

    • pourmajidian_metabolism-genes

      Public
      Python
      •1•2•0•0•Updated Dec 19, 2025Dec 19, 2025

    • bazinet_spins

      Public
      Code supporting Bazinet et al., 2025, "The effect of spherical projection on spin tests for brain maps" (Imaging Neuroscience)
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Nov 17, 2025Nov 17, 2025

    • Farahani_Metabolic_Health

      Public
      Python
      •0•0•0•0•Updated Oct 14, 2025Oct 14, 2025

    • pypyls

      Public
      A Python implementation of Partial Least Squares (PLS) decomposition
      Python
      •
      GNU General Public License v2.0
      •37•78•15•3•Updated Sep 18, 2025Sep 18, 2025

    • hansen_receptorvar

      Public
      Python
      •0•3•0•0•Updated Sep 8, 2025Sep 8, 2025

    • Farahani_Blood_Perfusion

      Public
      Cerebral blood perfusion across biological systems and the human lifespan
      Python
      •0•4•0•0•Updated Aug 28, 2025Aug 28, 2025

    • Farahani_ALS

      Public
      Network spreading and local biological vulnerability in amyotrophic lateral sclerosis
      Python
      •1•4•0•0•Updated Aug 28, 2025Aug 28, 2025

    • luppi-cognitive-matching

      Public
      MATLAB code for Luppi et al (2025) "General anaesthesia reduces the uniqueness of brain functional connectivity across individuals and across species", Nature H…
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Jul 24, 2025Jul 24, 2025

    • hansen_many_networks

      Public
      Data and code supporting Hansen et al., 2023 PLOS Biology "Integrating multimodal and multiscale connectivity blueprints of the human cerebral cortex in health …
      Python
      •5•35•0•0•Updated Jul 22, 2025Jul 22, 2025

    • milisav_hierarchical_modularity

      Public
      Data and code supporting Milisav et al., 2025 "Neuromorphic hierarchical modular reservoirs"
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Jul 9, 2025Jul 9, 2025

    • neuromaps

      Public
      A toolbox for comparing brain maps
      pythonneuroimaginghacktoberfestbrain-imaging
      Python
      •
      Other
      •63•317•26•7•Updated Apr 23, 2025Apr 23, 2025

    • pypmi

      Public
      A very small toolbox for working with data from the Parkinson's Progression Markers Initiative (PPMI)
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •10•0•0•0•Updated Mar 8, 2025Mar 8, 2025

    • luppi-neurosynth-control

      Public
      Code for Luppi et al (2024) Nature Biomedical Engineering
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •3•4•1•0•Updated Feb 2, 2025Feb 2, 2025

    • luppi-genes-receptors-macaque

      Public
      MATLAB code for Luppi et al (2024) "Benchmarking macaque brain gene expression for horizontal and vertical translation"
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • liu_fc-pyspi

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•13•0•0•Updated Jan 16, 2025Jan 16, 2025

    • markello_transcriptome

      Public
      Code and documentation supporting Markello et al, 2021, "Standardizing workflows in imaging transcriptomics with the abagen toolbox" (Biorxiv)
      TeX
      •
      BSD 3-Clause "New" or "Revised" License
      •3•10•1•0•Updated Jan 12, 2025Jan 12, 2025

    • markello_ppmisnf

      Public
      Code supporting the recent preprint Markello et al., 2020
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •8•36•2•3•Updated Jan 12, 2025Jan 12, 2025

    • liu_meg-scfc

      Public
      Python
      •1•1•0•0•Updated Jan 12, 2025Jan 12, 2025

    • shafiei_megdynamics

      Public
      Code supporting Shafiei et al., 2023 "Neurophysiological signatures of cortical micro-architecture".
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•9•0•0•Updated Jan 12, 2025Jan 12, 2025

    • shafiei_megfmrimapping

      Public
      Code supporting Shafiei et al., 2022 "Human electromagnetic and haemodynamic networks systematically converge in unimodal cortex and diverge in transmodal corte…
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•6•0•0•Updated Jan 12, 2025Jan 12, 2025

    • abagen

      Public
      A toolbox for working with Allen Human Brain Atlas microarray expression data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •50•14•0•0•Updated Jan 12, 2025Jan 12, 2025

    • suarez_neuromorphicnetworks

      Public
      Code supporting Suarez et al., 2021 "Learning function from structure in neuromorphic networks". ()
      Python
      •
      GNU General Public License v3.0
      •12•53•1•0•Updated Jan 12, 2025Jan 12, 2025

    • bazinet_multiscale

      Public
      Code and documentation supporting Bazinet et al., 2021, "Multiscale communication in cortico-cortical networks" (NeuroImage)
      Python
      •2•1•0•0•Updated Jan 12, 2025Jan 12, 2025

    • marmoset_connectome

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Jan 12, 2025Jan 12, 2025

    • milisav_strength_nulls

      Public
      Data and code supporting Milisav et al., 2024 "A simulated annealing algorithm for randomizing weighted networks"
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•6•0•0•Updated Jan 6, 2025Jan 6, 2025